RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SLC7A14Q8TBB6 771 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 ZSCAN18Q8TBC5 510 aaPredicted RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 SNX29Q8TEQ0 813 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 KLHL6Q8WZ60 621 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 TCF12Q99081 682 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 SLC13A1Q9BZW2 595 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PRDM11Q9NQV5 511 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 DISC1Q9NRI5 854 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 SUCOQ9UBS9 1254 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 EVLQ9UI08 416 aaPredicted RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 PPM1HQ9ULR3 514 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 POLR3KQ9Y2Y1 108 aaPredicted RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 TMX2Q9Y320 296 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 R3HCC1Q9Y3T6 440 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 SPEF1Q9Y4P9 236 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PCDHGA9Q9Y5G4 932 aaKnown RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 PCDHGA8Q9Y5G5 932 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PCDHGA7Q9Y5G6 932 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PCDHGA6Q9Y5G7 932 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PCDHGA3Q9Y5H0 932 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 PCDHGA2Q9Y5H1 932 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 AKAP11Q9UKA4 1901 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 SPATA31A3Q5VYP0 1347 aa3.63□□□□□ -1.83
VPS35-209ENST00000568642 ANKRD11Q6UB99 2663 aaPredicted RBP3.63□□□□□ -1.83
VPS35-209ENST00000568642 ZFYVE9O95405 1425 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 TIAM2Q8IVF5 1701 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 RBBP6Q7Z6E9 1792 aaKnown RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 SPDYE3A6NKU9 549 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 KRTAP9-7A8MTY7 169 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 J3KRW8 73 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 CA12O43570 354 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 DDAH1O94760 285 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 RPN1P04843 607 aaKnown RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 ACRP10323 421 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 INPP5BP32019 993 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 IL6STP40189 918 aaPredicted RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 STT3AP46977 705 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 STK3Q13188 491 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 DDX10Q13206 875 aaKnown RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 ZNF460Q14592 562 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 LBRQ14739 615 aaKnown RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 PCBP2Q15366 365 aaKnown RBP eCLIP3.62□□□□□ -1.83
VPS35-209ENST00000568642 ZYXQ15942 572 aaKnown RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 DEFB115Q30KQ5 88 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 TBC1D10BQ4KMP7 808 aaPredicted RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 TMEM240Q5SV17 173 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 HGSNATQ68CP4 663 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 HEATR6Q6AI08 1181 aaKnown RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 ARHGAP27Q6ZUM4 889 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 PTF1AQ7RTS3 328 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 GPR155Q7Z3F1 870 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 KRT28Q7Z3Y7 464 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 OR8H2Q8N162 312 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 ZNF513Q8N8E2 541 aaPredicted RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 PI4K2BQ8TCG2 481 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 IPO4Q8TEX9 1081 aaKnown RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 LEO1Q8WVC0 666 aaPredicted RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 POF1BQ8WVV4 589 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 GATAD2BQ8WXI9 593 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 SCLYQ96I15 445 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 SGCZQ96LD1 299 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 NLRP3Q96P20 1036 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 NACC1Q96RE7 527 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 PHACTR1Q9C0D0 580 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 ELP3Q9H9T3 547 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 FBRSQ9HAH7 460 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 BRMS1Q9HCU9 246 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 BLOC1S4Q9NUP1 217 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 SUSD2Q9UGT4 822 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 ZNF112Q9UJU3 913 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 ACAD8Q9UKU7 415 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 PNMA8BQ9ULN7 279 aaPredicted RBP3.62□□□□□ -1.83
VPS35-209ENST00000568642 FAM50BQ9Y247 325 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 SH3BP1Q9Y3L3 701 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 LAMA3Q16787 3333 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 KIF1AQ12756 1690 aa3.62□□□□□ -1.83
VPS35-209ENST00000568642 EPG5Q9HCE0 2579 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 PAPPA2Q9BXP8 1791 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 GPR179Q6PRD1 2367 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 NAV2Q8IVL1 2488 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 ARHGEF5Q12774 1597 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 A0A1W2PQU0 124 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 hCG_1642624A0A1W2PR95 340 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 TTC36A6NLP5 189 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 FAM155AB1AL88 458 aaPredicted RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 ATE1O95260 518 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 NPTXRO95502 500 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 MYCP01106 439 aaPredicted RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 SSTR4P31391 388 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 MCM4P33991 863 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 DDIT3P35638 169 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 MPP1Q00013 466 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 ROR1Q01973 937 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 ZNF252P-AS1Q0IIN9 211 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 FAAP100Q0VG06 881 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 GRB10Q13322 594 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 ABCB5Q2M3G0 1257 aa3.61□□□□□ -1.83
VPS35-209ENST00000568642 SKOR2Q2VWA4 1001 aaPredicted RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 ZC3H12BQ5HYM0 836 aaKnown RBP3.61□□□□□ -1.83
VPS35-209ENST00000568642 CT47A1Q5JQC4 288 aaPredicted RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms