RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 LENG1Q96BZ8 264 aaPredicted RBP25.04■■□□□ 1.6
CLN3-234ENST00000568472 INTS4Q96HW7 963 aaKnown RBP25.04■■□□□ 1.6
CLN3-234ENST00000568472 GJB4Q9NTQ9 266 aa25.04■■□□□ 1.6
CLN3-234ENST00000568472 LRRC37A2A6NM11 1700 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 KIAA0100Q14667 2235 aaKnown RBP25.03■■□□□ 1.6
CLN3-234ENST00000568472 CCDC194A0A1B0GVG4 234 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 MOXD2PA6NHM9 499 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 ADAMTS3O15072 1205 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 ITGB5P18084 799 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 MTMR1Q13613 665 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 NONOQ15233 471 aaKnown RBP eCLIP25.03■■□□□ 1.6
CLN3-234ENST00000568472 LY6KQ17RY6 165 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 GJC2Q5T442 439 aaPredicted RBP25.03■■□□□ 1.6
CLN3-234ENST00000568472 HSCBQ8IWL3 235 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 OR6J1Q8NGC5 347 aa25.03■■□□□ 1.6
CLN3-234ENST00000568472 MEIS1O00470 390 aa25.02■■□□□ 1.6
CLN3-234ENST00000568472 KPNA6O60684 536 aa25.02■■□□□ 1.6
CLN3-234ENST00000568472 ARIH2O95376 493 aa25.02■■□□□ 1.6
CLN3-234ENST00000568472 MYCNP04198 464 aaPredicted RBP25.02■■□□□ 1.6
CLN3-234ENST00000568472 CIITAP33076 1130 aa25.02■■□□□ 1.6
CLN3-234ENST00000568472 MNX1P50219 401 aaPredicted RBP25.02■■□□□ 1.6
CLN3-234ENST00000568472 FSCN1Q16658 493 aaKnown RBP25.02■■□□□ 1.6
CLN3-234ENST00000568472 DHX37Q8IY37 1157 aaKnown RBP25.02■■□□□ 1.6
CLN3-234ENST00000568472 A6NJR5 290 aa25.01■■□□□ 1.59
CLN3-234ENST00000568472 GJB2P29033 226 aa25.01■■□□□ 1.59
CLN3-234ENST00000568472 CELF3Q5SZQ8 465 aaKnown RBP25.01■■□□□ 1.59
CLN3-234ENST00000568472 TMEM63BQ5T3F8 832 aa25.01■■□□□ 1.59
CLN3-234ENST00000568472 CCSAPQ6IQ19 270 aaPredicted RBP25.01■■□□□ 1.59
CLN3-234ENST00000568472 DIS3L2Q8IYB7 885 aaKnown RBP25.01■■□□□ 1.59
CLN3-234ENST00000568472 TBCKQ8TEA7 893 aa25.01■■□□□ 1.59
CLN3-234ENST00000568472 PAWRQ96IZ0 340 aaKnown RBP25.01■■□□□ 1.59
CLN3-234ENST00000568472 ZFP91Q96JP5 570 aaPredicted RBP25.01■■□□□ 1.59
CLN3-234ENST00000568472 NAP1L4Q99733 375 aaKnown RBP25.01■■□□□ 1.59
CLN3-234ENST00000568472 C11orf49Q9H6J7 331 aa25.01■■□□□ 1.59
CLN3-234ENST00000568472 PHF24Q9UPV7 400 aa25.01■■□□□ 1.59
CLN3-234ENST00000568472 COL6A1P12109 1028 aa25■■□□□ 1.59
CLN3-234ENST00000568472 SETQ01105 290 aaPredicted RBP25■■□□□ 1.59
CLN3-234ENST00000568472 ARHGAP1Q07960 439 aa25■■□□□ 1.59
CLN3-234ENST00000568472 KCNA10Q16322 511 aa25■■□□□ 1.59
CLN3-234ENST00000568472 CTAGE5O15320 804 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 CABYRO75952 493 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 UBA1P22314 1058 aaKnown RBP24.99■■□□□ 1.59
CLN3-234ENST00000568472 ACLYP53396 1101 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 SEMA3FQ13275 785 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 MYSM1Q5VVJ2 828 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 MOXD1Q6UVY6 613 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 OXER1Q8TDS5 423 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 FOXP1Q9H334 677 aaPredicted RBP24.99■■□□□ 1.59
CLN3-234ENST00000568472 MLXIPQ9HAP2 919 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 KCNH7Q9NS40 1196 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 POLR3EQ9NVU0 708 aa24.99■■□□□ 1.59
CLN3-234ENST00000568472 CYP3A7-CYP3A51PA0A087WV96 503 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 BTBD18B2RXH4 712 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 GGPS1O95749 300 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 CYP3A7P24462 503 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 SP2Q02086 613 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 METTL7BQ6UX53 244 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 PPTC7Q8NI37 304 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 COPS5Q92905 334 aa24.98■■□□□ 1.59
CLN3-234ENST00000568472 FAM86B1E9PN63 330 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 ASGR1P07306 291 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 FAM86B2P0C5J1 330 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 PDCP20941 246 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 FOSBP53539 338 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 NR5A1Q13285 461 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 PIK3AP1Q6ZUJ8 805 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 NEK8Q86SG6 692 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 PLA2G4DQ86XP0 818 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 CYP2W1Q8TAV3 490 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 DIS3LQ8TF46 1054 aaKnown RBP24.97■■□□□ 1.59
CLN3-234ENST00000568472 TNFRSF25Q93038 417 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 GLT1D1Q96MS3 346 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 HTATIP2Q9BUP3 242 aa24.97■■□□□ 1.59
CLN3-234ENST00000568472 ELP1O95163 1332 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 IGLV3-22A0A075B6J6 115 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 MYADML2A6NDP7 307 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 PPFIA4O75335 1185 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 GCFC2P16383 781 aaKnown RBP24.96■■□□□ 1.59
CLN3-234ENST00000568472 KCNA2P16389 499 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 BEX3Q00994 111 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 GUCY1B3Q02153 619 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 INF2Q27J81 1249 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 AFG1LQ8WV93 481 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 SPATA33Q96N06 139 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 SEZ6LQ9BYH1 1024 aa24.96■■□□□ 1.59
CLN3-234ENST00000568472 SENP6Q9GZR1 1112 aaPredicted RBP24.96■■□□□ 1.59
CLN3-234ENST00000568472 BRCA2P51587 3418 aa24.95■■□□□ 1.59
CLN3-234ENST00000568472 NFASCO94856 1347 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 KIAA1217Q5T5P2 1943 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 H3BQV1 296 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 GNL2Q13823 731 aaKnown RBP24.95■■□□□ 1.58
CLN3-234ENST00000568472 DGKDQ16760 1214 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 Q4G0T1 1027 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 PRR16Q569H4 304 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 PPP4R3AQ6IN85 833 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 SDF4Q9BRK5 362 aa24.95■■□□□ 1.58
CLN3-234ENST00000568472 AGO4Q9HCK5 861 aaKnown RBP24.95■■□□□ 1.58
CLN3-234ENST00000568472 A0A1W2PQ45 241 aaPredicted RBP24.94■■□□□ 1.58
CLN3-234ENST00000568472 A0A1W2PQY0 241 aa24.94■■□□□ 1.58
CLN3-234ENST00000568472 ARP10275 920 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms