RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 RTN1Q16799 776 aa23.86■■□□□ 1.41
CLN3-219ENST00000565778 HEATR3Q7Z4Q2 680 aa23.86■■□□□ 1.41
CLN3-219ENST00000565778 HERVK_113Q902F9 699 aa23.86■■□□□ 1.41
CLN3-219ENST00000565778 KIAA1217Q5T5P2 1943 aa23.86■■□□□ 1.41
CLN3-219ENST00000565778 KLF18A0A0U1RQI7 1052 aa23.85■■□□□ 1.41
CLN3-219ENST00000565778 UBA1P22314 1058 aaKnown RBP23.85■■□□□ 1.41
CLN3-219ENST00000565778 BFSP2Q13515 415 aa23.85■■□□□ 1.41
CLN3-219ENST00000565778 RASIP1Q5U651 963 aa23.85■■□□□ 1.41
CLN3-219ENST00000565778 GDF6Q6KF10 455 aaPredicted RBP23.85■■□□□ 1.41
CLN3-219ENST00000565778 DEFB128Q7Z7B8 93 aa23.85■■□□□ 1.41
CLN3-219ENST00000565778 GUCD1Q96NT3 240 aa23.85■■□□□ 1.41
CLN3-219ENST00000565778 INPP4AQ96PE3 977 aaPredicted RBP23.85■■□□□ 1.41
CLN3-219ENST00000565778 HDAC6Q9UBN7 1215 aa23.85■■□□□ 1.41
CLN3-219ENST00000565778 FRMPD4Q14CM0 1322 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 GRXCR1A8MXD5 290 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 SPATA31C2B4DYI2 1134 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 REC8O95072 547 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 ZNF286BP0CG31 522 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 CPA1P15085 419 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 ICAM3P32942 547 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 HSPA4P34932 840 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 MFSD10Q14728 455 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 KIAA0753Q2KHM9 967 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 PCNX4Q63HM2 1172 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 XRRA1Q6P2D8 792 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 SESTD1Q86VW0 696 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 SLC17A8Q8NDX2 589 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 KCNB2Q92953 911 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 JAKMIP1Q96N16 626 aaKnown RBP23.84■■□□□ 1.41
CLN3-219ENST00000565778 TTYH1Q9H313 450 aaPredicted RBP23.84■■□□□ 1.41
CLN3-219ENST00000565778 BCAS3Q9H6U6 928 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 SNX14Q9Y5W7 946 aa23.84■■□□□ 1.41
CLN3-219ENST00000565778 V9GY48 417 aaPredicted RBP23.84■■□□□ 1.41
CLN3-219ENST00000565778 GOLGA8AA7E2F4 631 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 GOLGA8BA8MQT2 603 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 FIBPO43427 364 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 DNAJB2P25686 324 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 NEDD9Q14511 834 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 UBE2SQ16763 222 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 NLRX1Q86UT6 975 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 CDX2Q99626 313 aaPredicted RBP23.83■■□□□ 1.41
CLN3-219ENST00000565778 CXXC1Q9P0U4 656 aaPredicted RBP23.83■■□□□ 1.41
CLN3-219ENST00000565778 SCN10AQ9Y5Y9 1956 aa23.83■■□□□ 1.41
CLN3-219ENST00000565778 PITPNM1O00562 1244 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 NOP56O00567 594 aaKnown RBP23.82■■□□□ 1.4
CLN3-219ENST00000565778 F2P00734 622 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 IQCF3P0C7M6 154 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 BLOC1S2Q6QNY1 142 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 Q6ZUG5 572 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 CYFIP1Q7L576 1253 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 CCDC155Q8N6L0 562 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 GTF2IRD1Q9UHL9 959 aa23.82■■□□□ 1.4
CLN3-219ENST00000565778 SPDYE3A6NKU9 549 aa23.81■■□□□ 1.4
CLN3-219ENST00000565778 ZBBXA8MT70 800 aa23.81■■□□□ 1.4
CLN3-219ENST00000565778 HAS3O00219 553 aa23.81■■□□□ 1.4
CLN3-219ENST00000565778 PFKMP08237 780 aa23.81■■□□□ 1.4
CLN3-219ENST00000565778 HOXD8P13378 290 aaPredicted RBP23.81■■□□□ 1.4
CLN3-219ENST00000565778 TIFAQ96CG3 184 aa23.81■■□□□ 1.4
CLN3-219ENST00000565778 FTOQ9C0B1 505 aaKnown RBP eCLIP23.81■■□□□ 1.4
CLN3-219ENST00000565778 PCDHA6Q9UN73 950 aa23.81■■□□□ 1.4
CLN3-219ENST00000565778 PCDHA8Q9Y5H6 950 aa23.81■■□□□ 1.4
CLN3-219ENST00000565778 TMEM265A0A087WTH1 108 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 RFC2P35250 354 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 NAPAP54920 295 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 APOBRQ0VD83 1088 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 SEMA3FQ13275 785 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 WWC2Q6AWC2 1192 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 CAGE1Q8TC20 777 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 VWCEQ96DN2 955 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 C16orf70Q9BSU1 422 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 SLC4A7Q9Y6M7 1214 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 CNTNAP5Q8WYK1 1306 aa23.8■■□□□ 1.4
CLN3-219ENST00000565778 MYH7BA7E2Y1 1941 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 H3BRB1 525 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 ACTN1P12814 892 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 PSMA5P28066 241 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 CDC27P30260 824 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 ADD1P35611 737 aaKnown RBP23.79■■□□□ 1.4
CLN3-219ENST00000565778 PBX2P40425 430 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 FUT2Q10981 343 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 METTL7BQ6UX53 244 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 BRF1Q92994 677 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 USP26Q9BXU7 913 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 PBX4Q9BYU1 374 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 TUT1Q9H6E5 874 aaKnown RBP23.79■■□□□ 1.4
CLN3-219ENST00000565778 FAM217BQ9NTX9 383 aaPredicted RBP23.79■■□□□ 1.4
CLN3-219ENST00000565778 MSRAQ9UJ68 235 aa23.79■■□□□ 1.4
CLN3-219ENST00000565778 CCDC196A0A1B0GTZ2 297 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 METAP2P50579 478 aaKnown RBP eCLIP23.78■■□□□ 1.4
CLN3-219ENST00000565778 RCAN1P53805 252 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 ZNF200P98182 395 aaPredicted RBP23.78■■□□□ 1.4
CLN3-219ENST00000565778 GIMAP8Q8ND71 665 aaPredicted RBP23.78■■□□□ 1.4
CLN3-219ENST00000565778 MYLIPQ8WY64 445 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 CTAGE1Q96RT6 745 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 SENP7Q9BQF6 1050 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 ZNF576Q9H609 170 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 EHMT1Q9H9B1 1298 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 PPP4R2Q9NY27 417 aa23.78■■□□□ 1.4
CLN3-219ENST00000565778 RPS6KB1P23443 525 aa23.77■■□□□ 1.4
CLN3-219ENST00000565778 SP4Q02446 784 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms