RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GTF3C6Q969F1 213 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 VTI1AQ96AJ9 217 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 ABHD16BQ9H3Z7 469 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 SPC25Q9HBM1 224 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 BARHL2Q9NY43 387 aa19.79■□□□□ 0.76
CLN3-217ENST00000565354 A0A0U1RQG5 324 aaPredicted RBP19.78■□□□□ 0.76
CLN3-217ENST00000565354 STXBP3O00186 592 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 ARVCFO00192 962 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 DEXIO95424 95 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 ACRP10323 421 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 EIF2AK2P19525 551 aaKnown RBP19.78■□□□□ 0.76
CLN3-217ENST00000565354 ADCY7P51828 1080 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 ACVR2BQ13705 512 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 RAB30Q15771 203 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 CCDC148Q8NFR7 591 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 UPF3AQ9H1J1 476 aaKnown RBP19.78■□□□□ 0.76
CLN3-217ENST00000565354 SH2B1Q9NRF2 756 aaPredicted RBP19.78■□□□□ 0.76
CLN3-217ENST00000565354 COL20A1Q9P218 1284 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 MSRAQ9UJ68 235 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 REV3LO60673 3130 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 LCTP09848 1927 aa19.78■□□□□ 0.76
CLN3-217ENST00000565354 SMCO2A6NFE2 343 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 TLR3O15455 904 aaKnown RBP19.77■□□□□ 0.76
CLN3-217ENST00000565354 ADCY6O43306 1168 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 GJA9P57773 515 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 GHRHRQ02643 423 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 CCDC85BQ15834 202 aaPredicted RBP19.77■□□□□ 0.76
CLN3-217ENST00000565354 USP17L6PQ6QN14 398 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 EEPD1Q7L9B9 569 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 FAM126BQ8IXS8 530 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 UHRF1Q96T88 793 aaPredicted RBP19.77■□□□□ 0.76
CLN3-217ENST00000565354 PPP1R12CQ9BZL4 782 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 GLT8D2Q9H1C3 349 aa19.77■□□□□ 0.76
CLN3-217ENST00000565354 TCF20Q9UGU0 1960 aaKnown RBP19.77■□□□□ 0.75
CLN3-217ENST00000565354 ASTN1O14525 1302 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 SPDYE3A6NKU9 549 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 IGFBP4P22692 258 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 MCM2P49736 904 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 PKN1Q16512 942 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 UBE2SQ16763 222 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 CCDC144BQ3MJ40 725 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 GNASQ5JWF2 1037 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 CCDC83Q8IWF9 413 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 HERVK_113Q902F9 699 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 IWS1Q96ST2 819 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 EHMT1Q9H9B1 1298 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 C6orf50Q9HD87 102 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 IL23AQ9NPF7 189 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 PXMP2Q9NR77 195 aa19.76■□□□□ 0.75
CLN3-217ENST00000565354 TRANK1O15050 2925 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 PIK3CDO00329 1044 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 MYCLP12524 364 aaPredicted RBP19.75■□□□□ 0.75
CLN3-217ENST00000565354 XBP1P17861 261 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 CYP2C18P33260 490 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 FBXO16Q8IX29 292 aaPredicted RBP19.75■□□□□ 0.75
CLN3-217ENST00000565354 WASF1Q92558 559 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 MTIF3Q9H2K0 278 aaKnown RBP19.75■□□□□ 0.75
CLN3-217ENST00000565354 VTA1Q9NP79 307 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 RIC8AQ9NPQ8 531 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 VPS54Q9P1Q0 977 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 ORC3Q9UBD5 711 aaPredicted RBP19.75■□□□□ 0.75
CLN3-217ENST00000565354 DDX49Q9Y6V7 483 aaKnown RBP19.75■□□□□ 0.75
CLN3-217ENST00000565354 XIRP2A4UGR9 3374 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 STK36Q9NRP7 1315 aa19.75■□□□□ 0.75
CLN3-217ENST00000565354 MEIS2O14770 477 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 CD4P01730 458 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 GNA11P29992 359 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 PLA2G5P39877 138 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 NLRP5P59047 1200 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 STXBP2Q15833 593 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 TYW1BQ6NUM6 668 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 MORC4Q8TE76 937 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 NKX2-4Q9H2Z4 354 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 SLC28A3Q9HAS3 691 aa19.74■□□□□ 0.75
CLN3-217ENST00000565354 CXXC1Q9P0U4 656 aaPredicted RBP19.74■□□□□ 0.75
CLN3-217ENST00000565354 CTAGE5O15320 804 aa19.73■□□□□ 0.75
CLN3-217ENST00000565354 NR3C2P08235 984 aa19.73■□□□□ 0.75
CLN3-217ENST00000565354 CCND2P30279 289 aa19.73■□□□□ 0.75
CLN3-217ENST00000565354 BICD2Q8TD16 824 aa19.73■□□□□ 0.75
CLN3-217ENST00000565354 PDCD2LQ9BRP1 358 aa19.73■□□□□ 0.75
CLN3-217ENST00000565354 SH3GLB2Q9NR46 395 aa19.73■□□□□ 0.75
CLN3-217ENST00000565354 ESYT2A0FGR8 921 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 LRRC37A2A6NM11 1700 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 CTDNEP1O95476 244 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 FGBP02675 491 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 EDNRBP24530 442 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 NKX3-2P78367 333 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 PGM5Q15124 567 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 TEX2Q8IWB9 1127 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 NSUN7Q8NE18 718 aaKnown RBP19.72■□□□□ 0.75
CLN3-217ENST00000565354 ZMYND12Q9H0C1 365 aa19.72■□□□□ 0.75
CLN3-217ENST00000565354 YBX2Q9Y2T7 364 aaKnown RBP19.72■□□□□ 0.75
CLN3-217ENST00000565354 DTNBO60941 627 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 FOSP01100 380 aaPredicted RBP19.71■□□□□ 0.75
CLN3-217ENST00000565354 TNFAIP2Q03169 654 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 SLC43A3Q8NBI5 491 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 FAM122AQ96E09 287 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 ALG1Q9BT22 464 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 KATNBL1Q9H079 304 aa19.71■□□□□ 0.75
CLN3-217ENST00000565354 TSPYL2Q9H2G4 693 aaPredicted RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms