RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PPM1EQ8WY54 764 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 MAP3K14Q99558 947 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 TET1Q8NFU7 2136 aa19.84■□□□□ 0.77
CLN3-216ENST00000565316 FRMPD4Q14CM0 1322 aa19.83■□□□□ 0.77
CLN3-216ENST00000565316 ZNF286BP0CG31 522 aa19.83■□□□□ 0.77
CLN3-216ENST00000565316 POU3F3P20264 500 aaPredicted RBP19.83■□□□□ 0.77
CLN3-216ENST00000565316 CCND2P30279 289 aa19.83■□□□□ 0.77
CLN3-216ENST00000565316 KIAA0753Q2KHM9 967 aa19.83■□□□□ 0.77
CLN3-216ENST00000565316 LRRC8DQ7L1W4 858 aa19.83■□□□□ 0.77
CLN3-216ENST00000565316 CATIPQ7Z7H3 387 aa19.83■□□□□ 0.77
CLN3-216ENST00000565316 REV3LO60673 3130 aa19.83■□□□□ 0.76
CLN3-216ENST00000565316 GGPS1O95749 300 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 CKBP12277 381 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 UBA1P22314 1058 aaKnown RBP19.82■□□□□ 0.76
CLN3-216ENST00000565316 PTK7Q13308 1070 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 TRIM71Q2Q1W2 868 aaKnown RBP19.82■□□□□ 0.76
CLN3-216ENST00000565316 HSDL1Q3SXM5 330 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 SPATA33Q96N06 139 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 ALG1Q9BT22 464 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 MTA3Q9BTC8 594 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 THEGQ9P2T0 379 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 BAZ2BQ9UIF8 2168 aaKnown RBP19.82■□□□□ 0.76
CLN3-216ENST00000565316 MUC3AQ02505 3323 aa19.82■□□□□ 0.76
CLN3-216ENST00000565316 NBNO60934 754 aa19.81■□□□□ 0.76
CLN3-216ENST00000565316 CCDC85BQ15834 202 aaPredicted RBP19.81■□□□□ 0.76
CLN3-216ENST00000565316 TRAF7Q6Q0C0 670 aa19.81■□□□□ 0.76
CLN3-216ENST00000565316 FCHSD1Q86WN1 690 aa19.81■□□□□ 0.76
CLN3-216ENST00000565316 GPKOWQ92917 476 aaPredicted RBP eCLIP19.81■□□□□ 0.76
CLN3-216ENST00000565316 C16orf70Q9BSU1 422 aa19.81■□□□□ 0.76
CLN3-216ENST00000565316 RBM8AQ9Y5S9 174 aaKnown RBP19.81■□□□□ 0.76
CLN3-216ENST00000565316 TRIP12Q14669 1992 aaPredicted RBP19.81■□□□□ 0.76
CLN3-216ENST00000565316 KIF28PB7ZC32 967 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 SMARCA1P28370 1054 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 ICAM3P32942 547 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 WDR5P61964 334 aaKnown RBP19.8■□□□□ 0.76
CLN3-216ENST00000565316 IRX6P78412 446 aaPredicted RBP19.8■□□□□ 0.76
CLN3-216ENST00000565316 TAP1Q03518 808 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 HIC1Q14526 733 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 CNKSR3Q6P9H4 555 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 INPP4AQ96PE3 977 aaPredicted RBP19.8■□□□□ 0.76
CLN3-216ENST00000565316 ASB2Q96Q27 587 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 SPZ1Q9BXG8 430 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 LY9Q9HBG7 655 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 NCOR1O75376 2440 aa19.8■□□□□ 0.76
CLN3-216ENST00000565316 EPOPA6NHQ4 379 aa19.79■□□□□ 0.76
CLN3-216ENST00000565316 STAM2O75886 525 aa19.79■□□□□ 0.76
CLN3-216ENST00000565316 DDAH1O94760 285 aa19.79■□□□□ 0.76
CLN3-216ENST00000565316 ARHGEF15O94989 841 aa19.79■□□□□ 0.76
CLN3-216ENST00000565316 HOXC8P31273 242 aa19.79■□□□□ 0.76
CLN3-216ENST00000565316 KCNJ6P48051 423 aa19.79■□□□□ 0.76
CLN3-216ENST00000565316 MRPS5P82675 430 aaKnown RBP19.79■□□□□ 0.76
CLN3-216ENST00000565316 MRPS9P82933 396 aaKnown RBP19.79■□□□□ 0.76
CLN3-216ENST00000565316 ZNF200P98182 395 aaPredicted RBP19.79■□□□□ 0.76
CLN3-216ENST00000565316 WNT8BQ93098 351 aa19.79■□□□□ 0.76
CLN3-216ENST00000565316 ZFP91Q96JP5 570 aaPredicted RBP19.79■□□□□ 0.76
CLN3-216ENST00000565316 SPATA31C2B4DYI2 1134 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 SORBS3O60504 671 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 TCTN1Q2MV58 587 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 ZNF618Q5T7W0 954 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 SERINC5Q86VE9 423 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 ZNF654Q8IZM8 581 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 LZTS2Q9BRK4 669 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 LSG1Q9H089 658 aaKnown RBP19.78■□□□□ 0.76
CLN3-216ENST00000565316 BCAS3Q9H6U6 928 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 MLXIPQ9HAP2 919 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 MTCH2Q9Y6C9 303 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 MYH7BA7E2Y1 1941 aa19.78■□□□□ 0.76
CLN3-216ENST00000565316 ABHD14A-ACY1A0A1B0GW23 586 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 RFXAPO00287 272 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 PIK3CDO00329 1044 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 KIF5BP33176 963 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 SEMA3FQ13275 785 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 MBTPS1Q14703 1052 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 GNPTABQ3T906 1256 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 CTCFLQ8NI51 663 aaPredicted RBP19.77■□□□□ 0.76
CLN3-216ENST00000565316 CERS4Q9HA82 394 aa19.77■□□□□ 0.76
CLN3-216ENST00000565316 H3BRB1 525 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 PRC1O43663 620 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 TLL1O43897 1013 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 EFCAB14O75071 495 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 DEFB103AP81534 67 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 NEDD9Q14511 834 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 XRRA1Q6P2D8 792 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 TMTC2Q8N394 836 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 PIBF1Q8WXW3 757 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 RRP36Q96EU6 259 aaKnown RBP19.76■□□□□ 0.75
CLN3-216ENST00000565316 MYL10Q9BUA6 226 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 TSPYL2Q9H2G4 693 aaPredicted RBP19.76■□□□□ 0.75
CLN3-216ENST00000565316 TUT1Q9H6E5 874 aaKnown RBP19.76■□□□□ 0.75
CLN3-216ENST00000565316 XIRP2A4UGR9 3374 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 PRRC2BQ5JSZ5 2229 aaKnown RBP19.76■□□□□ 0.75
CLN3-216ENST00000565316 TNFRSF10AO00220 468 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 SH2B2O14492 632 aaPredicted RBP19.76■□□□□ 0.75
CLN3-216ENST00000565316 MEIS2O14770 477 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 LGALS2P05162 132 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 MCM5P33992 734 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 USP17L6PQ6QN14 398 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 CASC1Q6TDU7 716 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 METTL7BQ6UX53 244 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 ARNTL2Q8WYA1 636 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms