RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FBXO16Q8IX29 292 aaPredicted RBP23.38■■□□□ 1.33
CLN3-212ENST00000564574 CYP2W1Q8TAV3 490 aa23.38■■□□□ 1.33
CLN3-212ENST00000564574 ZFP91Q96JP5 570 aaPredicted RBP23.38■■□□□ 1.33
CLN3-212ENST00000564574 WDR11Q9BZH6 1224 aa23.38■■□□□ 1.33
CLN3-212ENST00000564574 DDX49Q9Y6V7 483 aaKnown RBP23.38■■□□□ 1.33
CLN3-212ENST00000564574 MORC2Q9Y6X9 1032 aaPredicted RBP23.38■■□□□ 1.33
CLN3-212ENST00000564574 SPATA31C2B4DYI2 1134 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 SLC37A4O43826 429 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 CYP2C19P33261 490 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 FOXD4L6Q3SYB3 417 aaPredicted RBP23.37■■□□□ 1.33
CLN3-212ENST00000564574 FOXD4L3Q6VB84 417 aaPredicted RBP23.37■■□□□ 1.33
CLN3-212ENST00000564574 SEPT14Q6ZU15 432 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 EEPD1Q7L9B9 569 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 SCFD2Q8WU76 684 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 TNPO1Q92973 898 aaKnown RBP23.37■■□□□ 1.33
CLN3-212ENST00000564574 ABHD8Q96I13 439 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 KCNH7Q9NS40 1196 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 PTCH2Q9Y6C5 1203 aa23.37■■□□□ 1.33
CLN3-212ENST00000564574 BAG4O95429 457 aaKnown RBP23.36■■□□□ 1.33
CLN3-212ENST00000564574 YEATS4O95619 227 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 GRK4P32298 578 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 ATP2C1P98194 919 aaPredicted RBP23.36■■□□□ 1.33
CLN3-212ENST00000564574 TTLL4Q14679 1199 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 PKN2Q16513 984 aaKnown RBP23.36■■□□□ 1.33
CLN3-212ENST00000564574 CALCRLQ16602 461 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 TAPT1Q6NXT6 567 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 POTEDQ86YR6 584 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 SLFN12Q8IYM2 578 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 FAM20AQ96MK3 541 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 KCNMB3Q9NPA1 279 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 ZHX1Q9UKY1 873 aaPredicted RBP23.36■■□□□ 1.33
CLN3-212ENST00000564574 CLIC4Q9Y696 253 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 MRVI1Q9Y6F6 885 aa23.36■■□□□ 1.33
CLN3-212ENST00000564574 MSH4O15457 936 aa23.35■■□□□ 1.33
CLN3-212ENST00000564574 ARP10275 920 aa23.35■■□□□ 1.33
CLN3-212ENST00000564574 ELNP15502 786 aa23.35■■□□□ 1.33
CLN3-212ENST00000564574 PTGDRQ13258 359 aa23.35■■□□□ 1.33
CLN3-212ENST00000564574 C4orf32Q8N8J7 132 aa23.35■■□□□ 1.33
CLN3-212ENST00000564574 ETNPPLQ8TBG4 499 aa23.35■■□□□ 1.33
CLN3-212ENST00000564574 SENP7Q9BQF6 1050 aa23.35■■□□□ 1.33
CLN3-212ENST00000564574 AGO4Q9HCK5 861 aaKnown RBP23.35■■□□□ 1.33
CLN3-212ENST00000564574 TFIP11Q9UBB9 837 aaKnown RBP23.35■■□□□ 1.33
CLN3-212ENST00000564574 MARCH6O60337 910 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 OR52Z1P0C646 297 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 ZNF865P0CJ78 1059 aaPredicted RBP23.34■■□□□ 1.33
CLN3-212ENST00000564574 CYBAP13498 195 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 NCLP19338 710 aaKnown RBP23.34■■□□□ 1.33
CLN3-212ENST00000564574 PRPHP41219 470 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 SEMA3FQ13275 785 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 SLC39A14Q15043 492 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 STK38Q15208 465 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 PTPAQ15257 358 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 ARL6IP4Q66PJ3 421 aaKnown RBP23.34■■□□□ 1.33
CLN3-212ENST00000564574 IQSEC1Q6DN90 963 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 LINC00301Q8NCQ3 95 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 GIMAP8Q8ND71 665 aaPredicted RBP23.34■■□□□ 1.33
CLN3-212ENST00000564574 MTMR9Q96QG7 549 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 ZNF577Q9BSK1 485 aa23.34■■□□□ 1.33
CLN3-212ENST00000564574 FTOQ9C0B1 505 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLN3-212ENST00000564574 SCAND2PQ9GZW5 306 aaPredicted RBP23.34■■□□□ 1.33
CLN3-212ENST00000564574 IPO5O00410 1097 aaKnown RBP23.33■■□□□ 1.33
CLN3-212ENST00000564574 NKRFO15226 690 aaKnown RBP eCLIP23.33■■□□□ 1.33
CLN3-212ENST00000564574 CEBPZQ03701 1054 aaKnown RBP23.33■■□□□ 1.33
CLN3-212ENST00000564574 NEDD9Q14511 834 aa23.33■■□□□ 1.33
CLN3-212ENST00000564574 SLC5A5Q92911 643 aa23.33■■□□□ 1.33
CLN3-212ENST00000564574 RIT2Q99578 217 aa23.33■■□□□ 1.33
CLN3-212ENST00000564574 TMEM60Q9H2L4 133 aa23.33■■□□□ 1.33
CLN3-212ENST00000564574 TBC1D22BQ9NU19 505 aa23.33■■□□□ 1.33
CLN3-212ENST00000564574 DDX41Q9UJV9 622 aaKnown RBP23.33■■□□□ 1.33
CLN3-212ENST00000564574 NFASCO94856 1347 aa23.33■■□□□ 1.32
CLN3-212ENST00000564574 DOCK5Q9H7D0 1870 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 KCNA2P16389 499 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 CACNB2Q08289 660 aaPredicted RBP23.32■■□□□ 1.32
CLN3-212ENST00000564574 PRAMEF19Q5SWL8 479 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 MAP3K21Q5TCX8 1036 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 CCDC62Q6P9F0 684 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 FBXO46Q6PJ61 603 aaPredicted RBP23.32■■□□□ 1.32
CLN3-212ENST00000564574 CLEC17AQ6ZS10 378 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 KCNG4Q8TDN1 519 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 HAS1Q92839 578 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 PDGFCQ9NRA1 345 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 RCOR1Q9UKL0 485 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 FAM184BQ9ULE4 1060 aa23.32■■□□□ 1.32
CLN3-212ENST00000564574 SPTLC2O15270 562 aa23.31■■□□□ 1.32
CLN3-212ENST00000564574 PPP6R2O75170 966 aa23.31■■□□□ 1.32
CLN3-212ENST00000564574 TXNP10599 105 aaKnown RBP23.31■■□□□ 1.32
CLN3-212ENST00000564574 PRKAR2AP13861 404 aaKnown RBP23.31■■□□□ 1.32
CLN3-212ENST00000564574 AKR1A1P14550 325 aa23.31■■□□□ 1.32
CLN3-212ENST00000564574 CCDC144BQ3MJ40 725 aa23.31■■□□□ 1.32
CLN3-212ENST00000564574 SDF4Q9BRK5 362 aa23.31■■□□□ 1.32
CLN3-212ENST00000564574 INHAP05111 366 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 UBA1P22314 1058 aaKnown RBP23.3■■□□□ 1.32
CLN3-212ENST00000564574 ADCYAP1R1P41586 468 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 TRIM32Q13049 653 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 TMEM266Q2M3C6 531 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 DUSP28Q4G0W2 176 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 LRCH2Q5VUJ6 765 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 TRPV1Q8NER1 839 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 FERMT2Q96AC1 680 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 SPATA32Q96LK8 384 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms