RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 CFAP70Q5T0N1 1121 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 THEMIS2Q5TEJ8 643 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 SYBUQ9NX95 663 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 RABGEF1Q9UJ41 708 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 TRIM60Q495X7 471 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 TMEM87BQ96K49 555 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 KCNG1Q9UIX4 513 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.77□□□□□ -1.33
CLK3-212ENST00000563418 KPNA4O00629 521 aaPredicted RBP6.77□□□□□ -1.33
CLK3-212ENST00000563418 ST13P50502 369 aaKnown RBP6.77□□□□□ -1.33
CLK3-212ENST00000563418 WTAPQ15007 396 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 NHEJ1Q9H9Q4 299 aaPredicted RBP6.77□□□□□ -1.33
CLK3-212ENST00000563418 ITIH6Q6UXX5 1313 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 PTCH1Q13635 1447 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 IQGAP2Q13576 1575 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 TTC4O95801 387 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 ARID5AQ03989 594 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 FAM173BQ6P4H8 233 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 POTEAQ6S8J7 498 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 STKLD1Q8NE28 680 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 LAMC1P11047 1609 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 DEFA1P59665 94 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 DEFA3P59666 94 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 DR1Q01658 176 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 ESCO1Q5FWF5 840 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 CAVIN3Q969G5 261 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 VPS50Q96JG6 964 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 TESK2Q96S53 571 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 CUEDC2Q9H467 287 aa6.77□□□□□ -1.33
CLK3-212ENST00000563418 N4BP1O75113 896 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 CACNA2D1P54289 1103 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 TUBA3EQ6PEY2 450 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 KIAA0232Q92628 1395 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 DNAJC6O75061 913 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 SNRNP27Q8WVK2 155 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 CCDC124Q96CT7 223 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 RIC8AQ9NPQ8 531 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 PRELID1Q9Y255 219 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 SKAP2O75563 359 aaPredicted RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 DTHD1Q6ZMT9 781 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 KDRP35968 1356 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 ADGRA3Q8IWK6 1321 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 GTPBP6O43824 516 aaPredicted RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 EIF2B2P49770 351 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 TRMT44Q8IYL2 757 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 SENP3Q9H4L4 574 aaPredicted RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 TNNQ9UQP3 1299 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 CAB39Q9Y376 341 aaPredicted RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 UNC13AQ9UPW8 1703 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 B3GNT6Q6ZMB0 384 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 RBM43Q6ZSC3 357 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 TCEANC2Q96MN5 208 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 ARHGAP26Q9UNA1 814 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 RIMS2Q9UQ26 1411 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 EIF4G3O43432 1585 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 ATF2P15336 505 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 RRAGAQ7L523 313 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 TTC25Q96NG3 672 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 KIAA0586Q9BVV6 1533 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 ORC4O43929 436 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 SHOX2O60902 331 aaPredicted RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 SASH3O75995 380 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 HMOX2P30519 316 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 BLMHQ13867 455 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 CWF19L2Q2TBE0 894 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 PEX5LQ8IYB4 626 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 CCT7Q99832 543 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 NT5C3AQ9H0P0 336 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 CCDC134Q9H6E4 229 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 A8MXQ7 604 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 MATN2O00339 956 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 ATP6V1C1P21283 382 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 ATICP31939 592 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 RNASE9P60153 205 aaKnown RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 TSC22D1Q15714 1073 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 PLEKHO1Q53GL0 409 aaPredicted RBP6.76□□□□□ -1.33
CLK3-212ENST00000563418 MIS18BP1Q6P0N0 1132 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 ARL10Q8N8L6 244 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 PDZD8Q8NEN9 1154 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 THAP9Q9H5L6 903 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 ANLNQ9NQW6 1124 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 PALD1Q9ULE6 856 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 CARMIL3Q8ND23 1372 aa6.76□□□□□ -1.33
CLK3-212ENST00000563418 RNPC3Q96LT9 517 aaKnown RBP6.75□□□□□ -1.33
CLK3-212ENST00000563418 VPS37BQ9H9H4 285 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 GALNT8Q9NY28 637 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 ZNF229Q9UJW7 825 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 ZNF330Q9Y3S2 320 aaPredicted RBP6.75□□□□□ -1.33
CLK3-212ENST00000563418 STK24Q9Y6E0 443 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 ARHGEF10O15013 1369 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 KRT14P02533 472 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 HSPA8P11142 646 aaKnown RBP6.75□□□□□ -1.33
CLK3-212ENST00000563418 GNAQP50148 359 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 STX1BP61266 288 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 TRPC7Q9HCX4 862 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 DBF4Q9UBU7 674 aaPredicted RBP6.75□□□□□ -1.33
CLK3-212ENST00000563418 ADCY9O60503 1353 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 SBNO2Q9Y2G9 1366 aa6.75□□□□□ -1.33
CLK3-212ENST00000563418 POTEFA5A3E0 1075 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms