RNA–Protein interactions for RNA: ENST00000561643.5

NEIL1-202, Transcript of nei like DNA glycosylase 1, humanhuman

TSL 5

Gene NEIL1, Length 3,271 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEIL1-202ENST00000561643 LRRC41Q15345 812 aa12.15□□□□□ -0.46
NEIL1-202ENST00000561643 GPIHBP1Q8IV16 184 aa12.15□□□□□ -0.46
NEIL1-202ENST00000561643 DDX12PQ92771 950 aa12.15□□□□□ -0.46
NEIL1-202ENST00000561643 SGSM3Q96HU1 749 aa12.15□□□□□ -0.46
NEIL1-202ENST00000561643 IFIH1Q9BYX4 1025 aaKnown RBP12.15□□□□□ -0.46
NEIL1-202ENST00000561643 TANGO6Q9C0B7 1094 aa12.15□□□□□ -0.46
NEIL1-202ENST00000561643 ACBD3Q9H3P7 528 aa12.15□□□□□ -0.46
NEIL1-202ENST00000561643 TTLL1O95922 423 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 MCM3P25205 808 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 PDIA5Q14554 519 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 SWT1Q5T5J6 900 aaKnown RBP12.14□□□□□ -0.47
NEIL1-202ENST00000561643 CCDC84Q86UT8 332 aaPredicted RBP12.14□□□□□ -0.47
NEIL1-202ENST00000561643 RPGRIP1Q96KN7 1286 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 TSG101Q99816 390 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 LRRC27Q9C0I9 530 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 PLAGL2Q9UPG8 496 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 PNMA6FA0A0J9YX94 578 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 ANO9A1A5B4 782 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 EPHB6O15197 1021 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 AKR1B10O60218 316 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 TRIM37O94972 964 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 SSBP05455 408 aaKnown RBP eCLIP12.14□□□□□ -0.47
NEIL1-202ENST00000561643 ADRA2BP18089 450 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 GSCP56915 257 aaPredicted RBP12.14□□□□□ -0.47
NEIL1-202ENST00000561643 LRRC63Q05C16 580 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 KCNK18Q7Z418 384 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 ADGRF4Q8IZF3 695 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 JMJD4Q9H9V9 463 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 DDX25Q9UHL0 483 aaKnown RBP12.14□□□□□ -0.47
NEIL1-202ENST00000561643 SIK3Q9Y2K2 1263 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 CDK5RAP2Q96SN8 1893 aa12.14□□□□□ -0.47
NEIL1-202ENST00000561643 MPHOSPH10O00566 681 aaKnown RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 ZNF263O14978 683 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 ZNF185O15231 689 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 GYS1P13807 737 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 KIF11P52732 1056 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 MAP9Q49MG5 647 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 RRAGAQ7L523 313 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 CUL5Q93034 780 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 RIC8AQ9NPQ8 531 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 LRRC4BQ9NT99 713 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 DONSONQ9NYP3 566 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 ARHGAP20Q9P2F6 1191 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 PLIN4Q96Q06 1357 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 EDIL3O43854 480 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 TACC1O75410 805 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 CPP00450 1065 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 SNHG28P0DPA3 235 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 SLC16A2P36021 539 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 EIF4A3P38919 411 aaKnown RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 GABPAQ06546 454 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 ZNF543Q08ER8 600 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 TTBK2Q6IQ55 1244 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 FNBP4Q8N3X1 1017 aaPredicted RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 MSL3Q8N5Y2 521 aaKnown RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 TRIM58Q8NG06 486 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 SMCR8Q8TEV9 937 aaPredicted RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 GJA10Q969M2 543 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 SERPINB13Q9UIV8 391 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 PCDHA13Q9Y5I0 950 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 NHSQ6T4R5 1651 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 A0A087WUV0 522 aaPredicted RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 LRRIQ3A6PVS8 624 aaPredicted RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 RAD21O60216 631 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 PPFIA4O75335 1185 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 FBXW10Q5XX13 1052 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 CACNA2D4Q7Z3S7 1137 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 GLIS3Q8NEA6 775 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 PURBQ96QR8 312 aaKnown RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 RABEP2Q9H5N1 569 aa12.13□□□□□ -0.47
NEIL1-202ENST00000561643 DDX4Q9NQI0 724 aaKnown RBP12.13□□□□□ -0.47
NEIL1-202ENST00000561643 LRRC53A6NM62 1247 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 ECM2O94769 699 aaPredicted RBP12.12□□□□□ -0.47
NEIL1-202ENST00000561643 HNRNPH3P31942 346 aaKnown RBP12.12□□□□□ -0.47
NEIL1-202ENST00000561643 MRPL12P52815 198 aaKnown RBP12.12□□□□□ -0.47
NEIL1-202ENST00000561643 SATB1Q01826 763 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 BIRC2Q13490 618 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 TMEM119Q4V9L6 283 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 IQCEQ6IPM2 695 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 PPP1R18Q6NYC8 613 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 MYOCDQ8IZQ8 938 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 CALR3Q96L12 384 aaKnown RBP12.12□□□□□ -0.47
NEIL1-202ENST00000561643 UIMC1Q96RL1 719 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 CEP89Q96ST8 783 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 BMP2KQ9NSY1 1161 aaPredicted RBP12.12□□□□□ -0.47
NEIL1-202ENST00000561643 ZMYND10O75800 440 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 ERLIN2O94905 339 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 PSMD2Q13200 908 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 CCDC40Q4G0X9 1142 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 PPP4R3AQ6IN85 833 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 LRRC55Q6ZSA7 311 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 KCTD1Q719H9 257 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 MLXIPQ9HAP2 919 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 USP40Q9NVE5 1235 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 ABCB11O95342 1321 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 IGKV6D-41A0A0C4DH26 115 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 PDE2AO00408 941 aaPredicted RBP12.12□□□□□ -0.47
NEIL1-202ENST00000561643 PPP1R11O60927 126 aaPredicted RBP12.12□□□□□ -0.47
NEIL1-202ENST00000561643 PDE6BP35913 854 aa12.12□□□□□ -0.47
NEIL1-202ENST00000561643 CCDC70Q6NSX1 233 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms