RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 COA7Q96BR5 231 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 NUDT12Q9BQG2 462 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 TRIM6Q9C030 488 aaPredicted RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 CUEDC2Q9H467 287 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 NLRC4Q9NPP4 1024 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 PICK1Q9NRD5 415 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 SEC63Q9UGP8 760 aaKnown RBP12.52□□□□□ -0.41
CUX1-218ENST00000560541 PLAGL2Q9UPG8 496 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 CASZ1Q86V15 1759 aa12.52□□□□□ -0.41
CUX1-218ENST00000560541 SLC37A4O43826 429 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 AMPD3Q01432 767 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 GRB10Q13322 594 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 REXO1Q8N1G1 1221 aaKnown RBP12.51□□□□□ -0.41
CUX1-218ENST00000560541 SPATA4Q8NEY3 305 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 ANKS1AQ92625 1134 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 CDK5RAP3Q96JB5 506 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 BLOC1S4Q9NUP1 217 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 G3BP2Q9UN86 482 aaKnown RBP12.51□□□□□ -0.41
CUX1-218ENST00000560541 SIK3Q9Y2K2 1263 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 APBA1Q02410 837 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 RASSF7Q02833 373 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 CCDC181Q5TID7 509 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 ZNF662Q6ZS27 426 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 CEP95Q96GE4 821 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 MS4A14Q96JA4 679 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 OSBPL9Q96SU4 736 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 POLD4Q9HCU8 107 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 COL22A1Q8NFW1 1626 aaPredicted RBP12.51□□□□□ -0.41
CUX1-218ENST00000560541 COL14A1Q05707 1796 aaKnown RBP12.51□□□□□ -0.41
CUX1-218ENST00000560541 GOLGA6CA6NDK9 693 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 USP17L5A8MUK1 530 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 BAG3O95817 575 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 GOLGA6DP0CG33 693 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 GNA11P29992 359 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 CDK8P49336 464 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 IRX1P78414 480 aaPredicted RBP12.51□□□□□ -0.41
CUX1-218ENST00000560541 NEDD9Q14511 834 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 TDRD12Q587J7 1177 aaKnown RBP12.51□□□□□ -0.41
CUX1-218ENST00000560541 CENPPQ6IPU0 288 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 CCDC70Q6NSX1 233 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 CLEC10AQ8IUN9 316 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 PSMD1Q99460 953 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 TSGA10Q9BZW7 698 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 ETAA1Q9NY74 926 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 GOLGA6AQ9NYA3 693 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 TBC1D7Q9P0N9 293 aa12.51□□□□□ -0.41
CUX1-218ENST00000560541 MAGEA1P43355 309 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 CALCRLQ16602 461 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 SLC10A5Q5PT55 438 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 IQCEQ6IPM2 695 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 CACNA2D4Q7Z3S7 1137 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 KCNK18Q7Z418 384 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 TEX11Q8IYF3 940 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 PNMA5Q96PV4 448 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 MAGEF1Q9HAY2 307 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 MYH1P12882 1939 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 A0A1W2PQJ5 194 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 SSBP05455 408 aaKnown RBP eCLIP12.5□□□□□ -0.41
CUX1-218ENST00000560541 GCKP35557 465 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 SLC1A4P43007 532 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 ARID5AQ03989 594 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 AMIGO3Q86WK7 504 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 FNBP4Q8N3X1 1017 aaPredicted RBP12.5□□□□□ -0.41
CUX1-218ENST00000560541 FAM76AQ8TAV0 307 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 AENQ8WTP8 325 aaKnown RBP12.5□□□□□ -0.41
CUX1-218ENST00000560541 LARP4BQ92615 738 aaKnown RBP12.5□□□□□ -0.41
CUX1-218ENST00000560541 CENPHQ9H3R5 247 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 FAM184BQ9ULE4 1060 aa12.5□□□□□ -0.41
CUX1-218ENST00000560541 GNPATO15228 680 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 RPS6KA5O75582 802 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 BTDP43251 543 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 RNASE9P60153 205 aaKnown RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 ACTN3Q08043 901 aaPredicted RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 KCTD19Q17RG1 926 aaPredicted RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 FMNL3Q8IVF7 1028 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 SNX29Q8TEQ0 813 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 MTMR8Q96EF0 704 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 ODF2LQ9ULJ1 636 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 ESYT3A0FGR9 886 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 TNNI2P48788 182 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 MAN2A1Q16706 1144 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 FIGNQ5HY92 759 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 LRRC47Q8N1G4 583 aaKnown RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 ALS2CR12Q96Q35 445 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 SPZ1Q9BXG8 430 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 KIF9Q9HAQ2 790 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.49□□□□□ -0.41
CUX1-218ENST00000560541 ZSCAN5CA6NGD5 496 aaPredicted RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 TM4SF1P30408 202 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 CLNS1AP54105 237 aaKnown RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 CDK17Q00537 523 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 CACNB1Q02641 598 aaPredicted RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 TPTE2Q6XPS3 522 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 TSEN2Q8NCE0 465 aaKnown RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 WDR66Q8TBY9 1149 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 PARD3BQ8TEW8 1205 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 DDX12PQ92771 950 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 ZBTB10Q96DT7 871 aa12.49□□□□□ -0.41
CUX1-218ENST00000560541 CDCA7Q9BWT1 371 aaPredicted RBP12.49□□□□□ -0.41
CUX1-218ENST00000560541 NYXQ9GZU5 481 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms