RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 MFSD10Q14728 455 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 MYSM1Q5VVJ2 828 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 PCNX4Q63HM2 1172 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 OTOP2Q7RTS6 562 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 ZNF713Q8N859 430 aaPredicted RBP16.21■□□□□ 0.19
TPM1-223ENST00000560445 FANCBQ8NB91 859 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 MAFAQ8NHW3 353 aaPredicted RBP16.21■□□□□ 0.19
TPM1-223ENST00000560445 CCDC136Q96JN2 1154 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 SLC9A7Q96T83 725 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 FTOQ9C0B1 505 aaKnown RBP eCLIP16.21■□□□□ 0.19
TPM1-223ENST00000560445 GLT8D2Q9H1C3 349 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 TTYH1Q9H313 450 aaPredicted RBP16.21■□□□□ 0.19
TPM1-223ENST00000560445 PSTPIP2Q9H939 334 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 SENP2Q9HC62 589 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 GTF2IRD1Q9UHL9 959 aa16.21■□□□□ 0.19
TPM1-223ENST00000560445 ZNF215Q9UL58 517 aaPredicted RBP16.21■□□□□ 0.19
TPM1-223ENST00000560445 UMODL1Q5DID0 1318 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 CCDC196A0A1B0GTZ2 297 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 SPDYE3A6NKU9 549 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 KIF28PB7ZC32 967 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 EFCAB14O75071 495 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 NEFLP07196 543 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 GNAT1P11488 350 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 SELPP16109 830 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 ATP2A2P16615 1042 aaKnown RBP16.2■□□□□ 0.18
TPM1-223ENST00000560445 UBA1P22314 1058 aaKnown RBP16.2■□□□□ 0.18
TPM1-223ENST00000560445 ICAM3P32942 547 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 CACNB1Q02641 598 aaPredicted RBP16.2■□□□□ 0.18
TPM1-223ENST00000560445 RBL2Q08999 1139 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 PTK7Q13308 1070 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 KIAA0753Q2KHM9 967 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 TSGA10IPQ3SY00 556 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 PPP1R18Q6NYC8 613 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 METTL7BQ6UX53 244 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 DHX32Q7L7V1 743 aaKnown RBP16.2■□□□□ 0.18
TPM1-223ENST00000560445 PHOSPHO2Q8TCD6 241 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 PIBF1Q8WXW3 757 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 INPP4AQ96PE3 977 aaPredicted RBP16.2■□□□□ 0.18
TPM1-223ENST00000560445 PBX4Q9BYU1 374 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 PCDHA11Q9Y5I1 949 aa16.2■□□□□ 0.18
TPM1-223ENST00000560445 MYH7BA7E2Y1 1941 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 IQCF3P0C7M6 154 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 HOXD11P31277 338 aaPredicted RBP16.19■□□□□ 0.18
TPM1-223ENST00000560445 KCNJ6P48051 423 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 TMTC3Q6ZXV5 915 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 LRRC8DQ7L1W4 858 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 MICU3Q86XE3 530 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.19■□□□□ 0.18
TPM1-223ENST00000560445 MYLIPQ8WY64 445 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 SCLYQ96I15 445 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 SENP7Q9BQF6 1050 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 MYL10Q9BUA6 226 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 USP26Q9BXU7 913 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 EMSYQ7Z589 1322 aa16.19■□□□□ 0.18
TPM1-223ENST00000560445 ZBTB43O43298 467 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 RGS20O76081 388 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 REC8O95072 547 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 ZNF286BP0CG31 522 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 SLC35G1Q2M3R5 365 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 DEFB128Q7Z7B8 93 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 KAT2BQ92831 832 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 GPRASP2Q96D09 838 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 ALG1Q9BT22 464 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 COL6A3P12111 3177 aa16.18■□□□□ 0.18
TPM1-223ENST00000560445 SPATA31C2B4DYI2 1134 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 HAS3O00219 553 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 MAFGO15525 162 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 CAND2O75155 1236 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 PLEKHA8P1O95397 391 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 RTN1Q16799 776 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 GDF6Q6KF10 455 aaPredicted RBP16.17■□□□□ 0.18
TPM1-223ENST00000560445 APOA5Q6Q788 366 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 HEATR3Q7Z4Q2 680 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 SRBD1Q8N5C6 995 aaKnown RBP16.17■□□□□ 0.18
TPM1-223ENST00000560445 IL31RAQ8NI17 732 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 TNPO1Q92973 898 aaKnown RBP16.17■□□□□ 0.18
TPM1-223ENST00000560445 CXXC1Q9P0U4 656 aaPredicted RBP16.17■□□□□ 0.18
TPM1-223ENST00000560445 HDAC6Q9UBN7 1215 aa16.17■□□□□ 0.18
TPM1-223ENST00000560445 C17orf102A2RUQ5 167 aa16.16■□□□□ 0.18
TPM1-223ENST00000560445 H3BRB1 525 aa16.16■□□□□ 0.18
TPM1-223ENST00000560445 FOSP01100 380 aaPredicted RBP16.16■□□□□ 0.18
TPM1-223ENST00000560445 HSDL1Q3SXM5 330 aa16.16■□□□□ 0.18
TPM1-223ENST00000560445 PPP2R2DQ66LE6 453 aa16.16■□□□□ 0.18
TPM1-223ENST00000560445 MCTP2Q6DN12 878 aa16.16■□□□□ 0.18
TPM1-223ENST00000560445 TUT1Q9H6E5 874 aaKnown RBP16.16■□□□□ 0.18
TPM1-223ENST00000560445 ABHD14A-ACY1A0A1B0GW23 586 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 DLL1O00548 723 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 MEIS2O14770 477 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 EPB41L2O43491 1005 aaKnown RBP16.15■□□□□ 0.18
TPM1-223ENST00000560445 RPLP2P05387 115 aaKnown RBP16.15■□□□□ 0.18
TPM1-223ENST00000560445 RXRAP19793 462 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 PSMA5P28066 241 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 MRPS9P82933 396 aaKnown RBP16.15■□□□□ 0.18
TPM1-223ENST00000560445 GRIN2CQ14957 1233 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 CNKSR3Q6P9H4 555 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 USP17L6PQ6QN14 398 aa16.15■□□□□ 0.18
TPM1-223ENST00000560445 CCDC12Q8WUD4 166 aaPredicted RBP16.15■□□□□ 0.18
TPM1-223ENST00000560445 TSPYL2Q9H2G4 693 aaPredicted RBP16.15■□□□□ 0.18
TPM1-223ENST00000560445 GOLGA8AA7E2F4 631 aa16.14■□□□□ 0.17
TPM1-223ENST00000560445 GOLGA8BA8MQT2 603 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms