RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 POTEMA6NI47 508 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 BCRP11274 1271 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 FCER1AP12319 257 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 CNTN2Q02246 1040 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 SREBF2Q12772 1141 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 WDR78Q5VTH9 848 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 PAXIP1Q6ZW49 1069 aaPredicted RBP12.64□□□□□ -0.39
USP3-218ENST00000560202 IFNL1Q8IU54 200 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 CKAP2LQ8IYA6 745 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 IQUBQ8NA54 791 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 SLC5A5Q92911 643 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 IWS1Q96ST2 819 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 WDR11Q9BZH6 1224 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 EFCC1Q9HA90 598 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 CCDC39Q9UFE4 941 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 SERTAD1Q9UHV2 236 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 SOWAHBA6NEL2 793 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 ACTN4O43707 911 aaKnown RBP12.64□□□□□ -0.39
USP3-218ENST00000560202 GRM1Q13255 1194 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 KARSQ15046 597 aaKnown RBP12.64□□□□□ -0.39
USP3-218ENST00000560202 TAF1CQ15572 869 aaPredicted RBP12.64□□□□□ -0.39
USP3-218ENST00000560202 E2F4Q16254 413 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 FAM110CQ1W6H9 321 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 CYP4F22Q6NT55 531 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 LRSAM1Q6UWE0 723 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 ELOA2Q8IYF1 753 aaPredicted RBP12.64□□□□□ -0.39
USP3-218ENST00000560202 FAM133AQ8N9E0 248 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 RASSF8Q8NHQ8 419 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 ZNF577Q9BSK1 485 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 MMTAG2Q9BU76 263 aaKnown RBP12.64□□□□□ -0.39
USP3-218ENST00000560202 DISC1Q9NRI5 854 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 KCNH7Q9NS40 1196 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 ADD3Q9UEY8 706 aaKnown RBP12.64□□□□□ -0.39
USP3-218ENST00000560202 USP25Q9UHP3 1055 aa12.64□□□□□ -0.39
USP3-218ENST00000560202 DNAJC25-GNG10A0A024R161 153 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 PSMD10O75832 226 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 SLFN14P0C7P3 912 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 TM4SF4P48230 202 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 ALDH5A1P51649 535 aaPredicted RBP12.63□□□□□ -0.39
USP3-218ENST00000560202 SPIRE1Q08AE8 756 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 MTMR1Q13613 665 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 ZRSR1Q15695 479 aaKnown RBP12.63□□□□□ -0.39
USP3-218ENST00000560202 LRCH2Q5VUJ6 765 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 RRAGBQ5VZM2 374 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 KRT79Q5XKE5 535 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 KANK3Q6NY19 840 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 CEP57L1Q8IYX8 460 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 NAP1L5Q96NT1 182 aaPredicted RBP12.63□□□□□ -0.39
USP3-218ENST00000560202 ZIC5Q96T25 663 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 VAV3Q9UKW4 847 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 ASTN1O14525 1302 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 ADGRA2Q96PE1 1338 aa12.63□□□□□ -0.39
USP3-218ENST00000560202 IPO5O00410 1097 aaKnown RBP12.62□□□□□ -0.39
USP3-218ENST00000560202 GAS7O60861 476 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 STAM2O75886 525 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 PGK2P07205 417 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 APLP1P51693 650 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 OTOP1Q7RTM1 612 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 NLRX1Q86UT6 975 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 SNX29Q8TEQ0 813 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 GPRASP2Q96D09 838 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 CALML4Q96GE6 196 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 CCDC34Q96HJ3 373 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 INPP4AQ96PE3 977 aaPredicted RBP12.62□□□□□ -0.39
USP3-218ENST00000560202 PLIN2Q99541 437 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 RIT2Q99578 217 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 NUDT12Q9BQG2 462 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 AGO4Q9HCK5 861 aaKnown RBP12.62□□□□□ -0.39
USP3-218ENST00000560202 CREBZFQ9NS37 354 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 CPA4Q9UI42 421 aa12.62□□□□□ -0.39
USP3-218ENST00000560202 HOOK1Q9UJC3 728 aaKnown RBP12.62□□□□□ -0.39
USP3-218ENST00000560202 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.61□□□□□ -0.39
USP3-218ENST00000560202 RASSF10A6NK89 507 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 FOXN1O15353 648 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 MAFGO15525 162 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 STRNO43815 780 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 EIF3JO75822 258 aaKnown RBP12.61□□□□□ -0.39
USP3-218ENST00000560202 XRCC6P12956 609 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP3-218ENST00000560202 EDNRBP24530 442 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 STAT6P42226 847 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 MDM2Q00987 491 aaPredicted RBP12.61□□□□□ -0.39
USP3-218ENST00000560202 STXBP2Q15833 593 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 DEFB115Q30KQ5 88 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 NAALADL2Q58DX5 795 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 NCAPH2Q6IBW4 605 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 PDXDC2PQ6P474 469 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 GAS2L3Q86XJ1 694 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 ERCC4Q92889 916 aaPredicted RBP12.61□□□□□ -0.39
USP3-218ENST00000560202 FUCA2Q9BTY2 467 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 TEKT3Q9BXF9 490 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 ZFYVE28Q9HCC9 887 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 KIAA1468Q9P260 1216 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 B4DLN1 442 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 SLC26A4O43511 780 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 TLR2O60603 784 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 RGS20O76081 388 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 PLCG1P19174 1290 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 MAPK4P31152 587 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 NOGQ13253 232 aa12.61□□□□□ -0.39
USP3-218ENST00000560202 GRB10Q13322 594 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms