RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 TRDNQ13061 729 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 BFSP2Q13515 415 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 GRM4Q14833 912 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 DGKDQ16760 1214 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 SESTD1Q86VW0 696 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 PIGSQ96S52 555 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 PDCD2LQ9BRP1 358 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 FTOQ9C0B1 505 aaKnown RBP eCLIP13.52□□□□□ -0.25
USP3-214ENST00000559718 HDAC6Q9UBN7 1215 aa13.52□□□□□ -0.25
USP3-214ENST00000559718 MYH7BA7E2Y1 1941 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 E7EWF7 191 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 RFXAPO00287 272 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 ARHGEF15O94989 841 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 CA3P07451 260 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 ACTN1P12814 892 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 CASTP20810 708 aaKnown RBP13.51□□□□□ -0.25
USP3-214ENST00000559718 RFC2P35250 354 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 PGM5Q15124 567 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 TMEM67Q5HYA8 995 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 PPTC7Q8NI37 304 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 RUFY2Q8WXA3 655 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 GPKOWQ92917 476 aaPredicted RBP eCLIP13.51□□□□□ -0.25
USP3-214ENST00000559718 EMID1Q96A84 441 aaPredicted RBP13.51□□□□□ -0.25
USP3-214ENST00000559718 ALG1Q9BT22 464 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 RIOX1Q9H6W3 641 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 CERS4Q9HA82 394 aa13.51□□□□□ -0.25
USP3-214ENST00000559718 EPOPA6NHQ4 379 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 SGSM2O43147 1006 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 PSEN2P49810 448 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 ANTXR2P58335 489 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 ZNF200P98182 395 aaPredicted RBP13.5□□□□□ -0.25
USP3-214ENST00000559718 SP2Q02086 613 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 TROAPQ12815 778 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 LAMC2Q13753 1193 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 HIC1Q14526 733 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 MFSD10Q14728 455 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 WTAPQ15007 396 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 TJAP1Q5JTD0 557 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 VSIG10LQ86VR7 867 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 FCHSD1Q86WN1 690 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 DHX37Q8IY37 1157 aaKnown RBP13.5□□□□□ -0.25
USP3-214ENST00000559718 PIBF1Q8WXW3 757 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 WNT8BQ93098 351 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 GTF2IRD1Q9UHL9 959 aa13.5□□□□□ -0.25
USP3-214ENST00000559718 SPTBN5Q9NRC6 3674 aaKnown RBP13.49□□□□□ -0.25
USP3-214ENST00000559718 TTC28Q96AY4 2481 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 GCOM1H8Y6P7 765 aaPredicted RBP13.49□□□□□ -0.25
USP3-214ENST00000559718 HAS3O00219 553 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 GGPS1O95749 300 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 F2P00734 622 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 POLR2MP0CAP2 368 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 KIAA0753Q2KHM9 967 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 TCTN1Q2MV58 587 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 HSDL1Q3SXM5 330 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 CELF3Q5SZQ8 465 aaKnown RBP13.49□□□□□ -0.25
USP3-214ENST00000559718 MYSM1Q5VVJ2 828 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 LRRC8DQ7L1W4 858 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 SPRED2Q7Z698 418 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 TMCO2Q7Z6W1 182 aaPredicted RBP13.49□□□□□ -0.25
USP3-214ENST00000559718 RALYLQ86SE5 291 aaKnown RBP13.49□□□□□ -0.25
USP3-214ENST00000559718 HERC6Q8IVU3 1022 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 MICALL1Q8N3F8 863 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 C7orf31Q8N865 590 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 NCOA7Q8NI08 942 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 CAGE1Q8TC20 777 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 IGDCC4Q8TDY8 1250 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 AFAP1L1Q8TED9 768 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 SYMPKQ92797 1274 aaKnown RBP13.49□□□□□ -0.25
USP3-214ENST00000559718 SPATA33Q96N06 139 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 SLC9A7Q96T83 725 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 BCAS3Q9H6U6 928 aa13.49□□□□□ -0.25
USP3-214ENST00000559718 MAP3K20Q9NYL2 800 aaKnown RBP13.49□□□□□ -0.25
USP3-214ENST00000559718 PNMA6FA0A0J9YX94 578 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 ERICH2A1L162 156 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 NBNO60934 754 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 CKBP12277 381 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 HOXD8P13378 290 aaPredicted RBP13.48□□□□□ -0.25
USP3-214ENST00000559718 SELPP16109 830 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 UBA1P22314 1058 aaKnown RBP13.48□□□□□ -0.25
USP3-214ENST00000559718 RBL2Q08999 1139 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 COL9A3Q14050 684 aaPredicted RBP13.48□□□□□ -0.25
USP3-214ENST00000559718 KRT40Q6A162 431 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 TRAF7Q6Q0C0 670 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 MB21D2Q8IYB1 491 aaPredicted RBP13.48□□□□□ -0.25
USP3-214ENST00000559718 CCDC155Q8N6L0 562 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 PHOSPHO2Q8TCD6 241 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 MYL10Q9BUA6 226 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 KATNAL1Q9BW62 490 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 THEGQ9P2T0 379 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 PTPRSQ13332 1948 aa13.48□□□□□ -0.25
USP3-214ENST00000559718 PRRC2BQ5JSZ5 2229 aaKnown RBP13.48□□□□□ -0.25
USP3-214ENST00000559718 BAIAP3O94812 1187 aa13.47□□□□□ -0.25
USP3-214ENST00000559718 CCND2P30279 289 aa13.47□□□□□ -0.25
USP3-214ENST00000559718 WDR5P61964 334 aaKnown RBP13.47□□□□□ -0.25
USP3-214ENST00000559718 DEFB103AP81534 67 aa13.47□□□□□ -0.25
USP3-214ENST00000559718 TAP1Q03518 808 aa13.47□□□□□ -0.25
USP3-214ENST00000559718 TRIM71Q2Q1W2 868 aaKnown RBP13.47□□□□□ -0.25
USP3-214ENST00000559718 CATIPQ7Z7H3 387 aa13.47□□□□□ -0.25
USP3-214ENST00000559718 SAMD3Q8N6K7 520 aa13.47□□□□□ -0.25
USP3-214ENST00000559718 ATXN2LQ8WWM7 1075 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms