RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 NUMBLQ9Y6R0 609 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 MYO3AQ8NEV4 1616 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 CHD1O14646 1710 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 GOLGA8TH3BQL2 631 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 OXSR1O95747 527 aaPredicted RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 GNAI2P04899 355 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 GOLGA8HP0CJ92 632 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 TNFRSF8P28908 595 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 TKTP29401 623 aaKnown RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 TUFMP49411 452 aaKnown RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 EPHB4P54760 987 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 BASP1P80723 227 aaKnown RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 CYLC2Q14093 348 aaPredicted RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 SEPT6Q14141 434 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 KARSQ15046 597 aaKnown RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 GSTA3Q16772 222 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 EFCAB2Q5VUJ9 269 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 TBC1D1Q86TI0 1168 aaPredicted RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 LINC00469Q8N7U9 141 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 OSBPL3Q9H4L5 887 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 MRPL44Q9H9J2 332 aaKnown RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 TIMMDC1Q9NPL8 285 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 DCAF16Q9NXF7 216 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 INTUQ9ULD6 942 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 GPC6Q9Y625 555 aaPredicted RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 ADCY9O60503 1353 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 CEMIPQ8WUJ3 1361 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 SHPRHQ149N8 1683 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 SPTLC1O15269 473 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 FOXD2O60548 495 aaPredicted RBP9.22□□□□□ -0.93
USP3-211ENST00000559257 LGR5O75473 907 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 APOEP02649 317 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 CACNA2D1P54289 1103 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 ITGB3BPQ13352 177 aaPredicted RBP9.22□□□□□ -0.93
USP3-211ENST00000559257 BIRC3Q13489 604 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 MTMR3Q13615 1198 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 KPNB1Q14974 876 aaKnown RBP9.22□□□□□ -0.93
USP3-211ENST00000559257 CRY1Q16526 586 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 SH3D19Q5HYK7 790 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 ZNF569Q5MCW4 686 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 WDR45BQ5MNZ6 344 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 SYCP2LQ5T4T6 812 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 TWF2Q6IBS0 349 aaKnown RBP9.22□□□□□ -0.93
USP3-211ENST00000559257 PHLDB3Q6NSJ2 640 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 SIRT2Q8IXJ6 389 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 CCDC197Q8NCU1 140 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 DNAJC9Q8WXX5 260 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 TAF1DQ9H5J8 278 aaPredicted RBP9.22□□□□□ -0.93
USP3-211ENST00000559257 ETNK2Q9NVF9 386 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.22□□□□□ -0.931e-6■■■■■ 35.6
USP3-211ENST00000559257 RASAL2Q9UJF2 1139 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 TBC1D30Q9Y2I9 924 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 SNX9Q9Y5X1 595 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 SBNO2Q9Y2G9 1366 aa9.22□□□□□ -0.93
USP3-211ENST00000559257 hCG_2014768A0A024R1R8 64 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 KMOO15229 486 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 DGKIO75912 1065 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 CALB2P22676 271 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 MXI1P50539 228 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 DR1Q01658 176 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 FAM160A1Q05DH4 1040 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 PAK2Q13177 524 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 LVRNQ6Q4G3 990 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 SND1Q7KZF4 910 aaKnown RBP eCLIP9.21□□□□□ -0.93
USP3-211ENST00000559257 ALDH16A1Q8IZ83 802 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 SDCCAG3Q96C92 435 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 RRP36Q96EU6 259 aaKnown RBP9.21□□□□□ -0.93
USP3-211ENST00000559257 IFT74Q96LB3 600 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 ATP6V1G3Q96LB4 118 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 MAP3K14Q99558 947 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 FHDC1Q9C0D6 1143 aaPredicted RBP9.21□□□□□ -0.93
USP3-211ENST00000559257 TRPC7Q9HCX4 862 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 MROH7Q68CQ1 1323 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 JCADQ9P266 1359 aa9.21□□□□□ -0.93
USP3-211ENST00000559257 CHGBP05060 677 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 NCAPHQ15003 741 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 ANKDD1AQ495B1 522 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 C4orf46Q504U0 113 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 MEX3CQ5U5Q3 659 aaKnown RBP9.21□□□□□ -0.94
USP3-211ENST00000559257 PTF1AQ7RTS3 328 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 VPS36Q86VN1 386 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 ENDOVQ8N8Q3 282 aaKnown RBP9.21□□□□□ -0.94
USP3-211ENST00000559257 RBBP8NLQ8NC74 664 aaPredicted RBP9.21□□□□□ -0.94
USP3-211ENST00000559257 FNDC8Q8TC99 324 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 STARD8Q92502 1023 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 ANKRD36BP1Q96IX9 119 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 NSMCE3Q96MG7 304 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 ESF1Q9H501 851 aaKnown RBP9.21□□□□□ -0.94
USP3-211ENST00000559257 RNPEPL1Q9HAU8 725 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 SEC63Q9UGP8 760 aaKnown RBP9.21□□□□□ -0.94
USP3-211ENST00000559257 KIAA1257Q9ULG3 409 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 PPP1R9AQ9ULJ8 1098 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 ZNF711Q9Y462 761 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 ADGRG1Q9Y653 693 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 AFF2P51816 1311 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 VWDEQ8N2E2 1590 aa9.21□□□□□ -0.94
USP3-211ENST00000559257 KAT6BQ8WYB5 2073 aa9.2□□□□□ -0.94
USP3-211ENST00000559257 ZFYVE16Q7Z3T8 1539 aa9.2□□□□□ -0.94
USP3-211ENST00000559257 OVOS2A0A0G2JMS6 1433 aa9.2□□□□□ -0.94
USP3-211ENST00000559257 OVOS2A0A0J9YW53 1432 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms