RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 CTAGE5O15320 804 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 EDNRBP24530 442 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 TLE2Q04725 743 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 PGM5Q15124 567 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 DUSP28Q4G0W2 176 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 WWC2Q6AWC2 1192 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 SH3RF1Q7Z6J0 888 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 PCSK9Q8NBP7 692 aaKnown RBP11.1□□□□□ -0.63
SPG11-214ENST00000558989 SCFD2Q8WU76 684 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 PGBD1Q96JS3 809 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 GLT1D1Q96MS3 346 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 PDCD2LQ9BRP1 358 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 UPF3AQ9H1J1 476 aaKnown RBP11.1□□□□□ -0.63
SPG11-214ENST00000558989 FAM217BQ9NTX9 383 aaPredicted RBP11.1□□□□□ -0.63
SPG11-214ENST00000558989 PRKAG2Q9UGJ0 569 aa11.1□□□□□ -0.63
SPG11-214ENST00000558989 TRIP12Q14669 1992 aaPredicted RBP11.1□□□□□ -0.63
SPG11-214ENST00000558989 MOXD2PA6NHM9 499 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 NAPAP54920 295 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 TRAF1Q13077 416 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 TOB2Q14106 344 aaPredicted RBP11.09□□□□□ -0.63
SPG11-214ENST00000558989 TTLL4Q14679 1199 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 CCSAPQ6IQ19 270 aaPredicted RBP11.09□□□□□ -0.63
SPG11-214ENST00000558989 EXOC8Q8IYI6 725 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 PHKBQ93100 1093 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 PSTPIP2Q9H939 334 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 ZSWIM6Q9HCJ5 1215 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 PDRG1Q9NUG6 133 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 RBM27Q9P2N5 1060 aaKnown RBP11.09□□□□□ -0.63
SPG11-214ENST00000558989 PPME1Q9Y570 386 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 MRVI1Q9Y6F6 885 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 LTBP2Q14767 1821 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 SMARCA1P28370 1054 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 MAGEA10P43363 369 aaPredicted RBP11.09□□□□□ -0.63
SPG11-214ENST00000558989 IWS1Q96ST2 819 aa11.09□□□□□ -0.63
SPG11-214ENST00000558989 TSEN34Q9BSV6 310 aaKnown RBP11.09□□□□□ -0.63
SPG11-214ENST00000558989 KAT6AQ92794 2004 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 MEIS2O14770 477 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 ZEB2O60315 1214 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 CST5P28325 142 aaPredicted RBP11.08□□□□□ -0.64
SPG11-214ENST00000558989 CCND2P30279 289 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 RFC5P40937 340 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 TYW1BQ6NUM6 668 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 TMUB1Q9BVT8 246 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 SLC26A6Q9BXS9 759 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 PKD2L1Q9P0L9 805 aa11.08□□□□□ -0.64
SPG11-214ENST00000558989 EIF3JO75822 258 aaKnown RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 RGS20O76081 388 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 FECHP22830 423 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 PDIA3P30101 505 aaKnown RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 SP4Q02446 784 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 FUT2Q10981 343 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 TMEM259Q4ZIN3 620 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 NAALADL2Q58DX5 795 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 FAM47CQ5HY64 1035 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 HABP4Q5JVS0 413 aaKnown RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 AFG1LQ8WV93 481 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 TMEM260Q9NX78 707 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 A0A0U1RQG5 324 aaPredicted RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 TRIM43BA6NCK2 446 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 SMCO2A6NFE2 343 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 SPDYE3A6NKU9 549 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 GH1P01241 217 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 CPT1AP50416 773 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 AKAP17AQ02040 695 aaKnown RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 VSIG10LQ86VR7 867 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 MICAL1Q8TDZ2 1067 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 TRIM43Q96BQ3 446 aaPredicted RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 LBHD1Q9BQE6 289 aaPredicted RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 UBE2OQ9C0C9 1292 aaKnown RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 BCAS3Q9H6U6 928 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 PDLIM7Q9NR12 457 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 TMEM39AQ9NV64 488 aa11.07□□□□□ -0.64
SPG11-214ENST00000558989 MAP3K20Q9NYL2 800 aaKnown RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 DDX41Q9UJV9 622 aaKnown RBP11.07□□□□□ -0.64
SPG11-214ENST00000558989 SCN10AQ9Y5Y9 1956 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 CCDC196A0A1B0GTZ2 297 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 DCDC2CA8MYV0 355 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 STXBP3O00186 592 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 ARVCFO00192 962 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 DPYSL4O14531 572 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 EPB41L2O43491 1005 aaKnown RBP11.06□□□□□ -0.64
SPG11-214ENST00000558989 CLTBP09497 229 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 ADCY7P51828 1080 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 MRPS9P82933 396 aaKnown RBP11.06□□□□□ -0.64
SPG11-214ENST00000558989 GHRHRQ02643 423 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 ITGA7Q13683 1181 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 SNX17Q15036 470 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 BRDTQ58F21 947 aaPredicted RBP11.06□□□□□ -0.64
SPG11-214ENST00000558989 JAKMIP3Q5VZ66 844 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 CCDC62Q6P9F0 684 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 BADQ92934 168 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 UIMC1Q96RL1 719 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 AGXT2Q9BYV1 514 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 PPP1R12CQ9BZL4 782 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 PCDHA6Q9UN73 950 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 Q9Y3F1 56 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 PCDHA8Q9Y5H6 950 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 SCN5AQ14524 2016 aa11.06□□□□□ -0.64
SPG11-214ENST00000558989 RANBP2P49792 3224 aaKnown RBP11.06□□□□□ -0.64
SPG11-214ENST00000558989 RBAK-RBAKDNI3L0D1 243 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms