RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 CDC45O75419 566 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 STAM2O75886 525 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 GH1P01241 217 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 POLR2MP0CAP2 368 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 SMAD3P84022 425 aaKnown RBP11.7□□□□□ -0.54
USP3-207ENST00000558218 KRT32Q14532 448 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 TMEM63BQ5T3F8 832 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 NFRKBQ6P4R8 1299 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 VSIG10LQ86VR7 867 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 SGMS1Q86VZ5 419 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 ZNF654Q8IZM8 581 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 EMID1Q96A84 441 aaPredicted RBP11.7□□□□□ -0.54
USP3-207ENST00000558218 RRP36Q96EU6 259 aaKnown RBP11.7□□□□□ -0.54
USP3-207ENST00000558218 CCDC136Q96JN2 1154 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 SENP2Q9HC62 589 aa11.7□□□□□ -0.54
USP3-207ENST00000558218 BAZ2BQ9UIF8 2168 aaKnown RBP11.69□□□□□ -0.54
USP3-207ENST00000558218 DNAH12Q6ZR08 3092 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 SH2B2O14492 632 aaPredicted RBP11.69□□□□□ -0.54
USP3-207ENST00000558218 HMGB1P09429 215 aaKnown RBP11.69□□□□□ -0.54
USP3-207ENST00000558218 CASTP20810 708 aaKnown RBP11.69□□□□□ -0.54
USP3-207ENST00000558218 LAMC2Q13753 1193 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 SLC35G1Q2M3R5 365 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 SYNE3Q6ZMZ3 975 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 NFXL1Q6ZNB6 911 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 SEPT14Q6ZU15 432 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 HOMER1Q86YM7 354 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 DEFB123Q8N688 67 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 NEK1Q96PY6 1258 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 PDCD2LQ9BRP1 358 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 DDX41Q9UJV9 622 aaKnown RBP11.69□□□□□ -0.54
USP3-207ENST00000558218 SLC12A7Q9Y666 1083 aa11.69□□□□□ -0.54
USP3-207ENST00000558218 KIAA1217Q5T5P2 1943 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 TMEM265A0A087WTH1 108 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 PIK3CDO00329 1044 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 EPB41L2O43491 1005 aaKnown RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 PPFIA4O75335 1185 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 MYL3P08590 195 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 EXOSC10Q01780 885 aaKnown RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 TSR1Q2NL82 804 aaKnown RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 PROX2Q3B8N5 592 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 C9orf50Q5SZB4 431 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 XRRA1Q6P2D8 792 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 DHX32Q7L7V1 743 aaKnown RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 SESTD1Q86VW0 696 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 RPUSD2Q8IZ73 545 aaKnown RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 FANCBQ8NB91 859 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 ALDH8A1Q9H2A2 487 aaPredicted RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 MTMR10Q9NXD2 777 aa11.68□□□□□ -0.54
USP3-207ENST00000558218 SEC63Q9UGP8 760 aaKnown RBP11.68□□□□□ -0.54
USP3-207ENST00000558218 SCN10AQ9Y5Y9 1956 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 B4GALT4O60513 344 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 ARIH2O95376 493 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 EIF2AK2P19525 551 aaKnown RBP11.67□□□□□ -0.54
USP3-207ENST00000558218 CCND2P30279 289 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 RCAN1P53805 252 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 EPHB4P54760 987 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 ARHGAP1Q07960 439 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 PGM5Q15124 567 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 DGKDQ16760 1214 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 PSRC1Q6PGN9 363 aaPredicted RBP11.67□□□□□ -0.54
USP3-207ENST00000558218 KCNB2Q92953 911 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 CUL5Q93034 780 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 RNPC3Q96LT9 517 aaKnown RBP11.67□□□□□ -0.54
USP3-207ENST00000558218 HIPK3Q9H422 1215 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 IL23AQ9NPF7 189 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 VPS9D1Q9Y2B5 631 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 STXBP5LQ9Y2K9 1186 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 MRVI1Q9Y6F6 885 aa11.67□□□□□ -0.54
USP3-207ENST00000558218 MAP3K7O43318 606 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 PFKMP08237 780 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 MMP3P08254 477 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 HOXD8P13378 290 aaPredicted RBP11.66□□□□□ -0.54
USP3-207ENST00000558218 CSF2RAP15509 400 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 PTGS1P23219 599 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 HOXA13P31271 388 aaPredicted RBP11.66□□□□□ -0.54
USP3-207ENST00000558218 ICAM3P32942 547 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 PSMC6P62333 389 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 LY6KQ17RY6 165 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 NBPF20Q3BBV1 942 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 GNPTABQ3T906 1256 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 TMEM240Q5SV17 173 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 ZNF697Q5TEC3 545 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 RASIP1Q5U651 963 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 MYSM1Q5VVJ2 828 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 ERICH6BQ5W0A0 696 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 C16orf59Q7L2K0 433 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 DHX37Q8IY37 1157 aaKnown RBP11.66□□□□□ -0.54
USP3-207ENST00000558218 SRBD1Q8N5C6 995 aaKnown RBP11.66□□□□□ -0.54
USP3-207ENST00000558218 PPTC7Q8NI37 304 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 AFG1LQ8WV93 481 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 COPS5Q92905 334 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 EPAS1Q99814 870 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 ZBED2Q9BTP6 218 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 NOC4LQ9BVI4 516 aaKnown RBP11.66□□□□□ -0.54
USP3-207ENST00000558218 KATNAL1Q9BW62 490 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 TRPV6Q9H1D0 765 aa11.66□□□□□ -0.54
USP3-207ENST00000558218 MTIF3Q9H2K0 278 aaKnown RBP11.66□□□□□ -0.54
USP3-207ENST00000558218 RBM28Q9NW13 759 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms