RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 CPLX1O14810 134 aa23.66■■□□□ 1.38
CCDC88C-210ENST00000555995 CELF3Q5SZQ8 465 aaKnown RBP23.66■■□□□ 1.38
CCDC88C-210ENST00000555995 NFRKBQ6P4R8 1299 aa23.66■■□□□ 1.38
CCDC88C-210ENST00000555995 SH3RF1Q7Z6J0 888 aa23.66■■□□□ 1.38
CCDC88C-210ENST00000555995 GIMAP8Q8ND71 665 aaPredicted RBP23.66■■□□□ 1.38
CCDC88C-210ENST00000555995 GPRASP2Q96D09 838 aa23.66■■□□□ 1.38
CCDC88C-210ENST00000555995 SMCO2A6NFE2 343 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 GGPS1O95749 300 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 CD4P01730 458 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 UBA1P22314 1058 aaKnown RBP23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 MRPS9P82933 396 aaKnown RBP23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 UBE2SQ16763 222 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 IL17RAQ96F46 866 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 SENP7Q9BQF6 1050 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 ALDH8A1Q9H2A2 487 aaPredicted RBP23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 MLXIPQ9HAP2 919 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 PCDHA6Q9UN73 950 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 PCDHA8Q9Y5H6 950 aa23.65■■□□□ 1.38
CCDC88C-210ENST00000555995 TIMP1P01033 207 aa23.64■■□□□ 1.37
CCDC88C-210ENST00000555995 GNA11P29992 359 aa23.64■■□□□ 1.37
CCDC88C-210ENST00000555995 PSMC6P62333 389 aa23.64■■□□□ 1.37
CCDC88C-210ENST00000555995 MYSM1Q5VVJ2 828 aa23.64■■□□□ 1.37
CCDC88C-210ENST00000555995 BADQ92934 168 aa23.64■■□□□ 1.37
CCDC88C-210ENST00000555995 SPATA33Q96N06 139 aa23.64■■□□□ 1.37
CCDC88C-210ENST00000555995 C6orf50Q9HD87 102 aa23.64■■□□□ 1.37
CCDC88C-210ENST00000555995 GRIN2DO15399 1336 aa23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 SPATA31C2B4DYI2 1134 aa23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 MAFGO15525 162 aa23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 PPFIA4O75335 1185 aa23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 CDKL5O76039 1030 aa23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 HOXD8P13378 290 aaPredicted RBP23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 FXR1P51114 621 aaKnown RBP eCLIP23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 FPGSQ05932 587 aa23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 FAM177A1Q8N128 213 aaPredicted RBP23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 BICD2Q8TD16 824 aa23.63■■□□□ 1.37
CCDC88C-210ENST00000555995 NOP56O00567 594 aaKnown RBP23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 CCT2P78371 535 aaKnown RBP23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 NTRK3Q16288 839 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 NBPF20Q3BBV1 942 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 LRIT3Q3SXY7 679 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 FAM47CQ5HY64 1035 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 TYW1BQ6NUM6 668 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 METTL7BQ6UX53 244 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 TMEM199Q8N511 208 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 SLC26A6Q9BXS9 759 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 ZMYND12Q9H0C1 365 aa23.62■■□□□ 1.37
CCDC88C-210ENST00000555995 B4GALT4O60513 344 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 SSRP1Q08945 709 aaKnown RBP23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 PPIGQ13427 754 aaKnown RBP eCLIP23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 MFSD5Q6N075 450 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 SESTD1Q86VW0 696 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 PHKBQ93100 1093 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 ANO3Q9BYT9 981 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 HIPK3Q9H422 1215 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 SH3GLB2Q9NR46 395 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 RTEL1Q9NZ71 1219 aa23.61■■□□□ 1.37
CCDC88C-210ENST00000555995 F2P00734 622 aa23.6■■□□□ 1.37
CCDC88C-210ENST00000555995 CLK2P49760 499 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-210ENST00000555995 MTMR1Q13613 665 aa23.6■■□□□ 1.37
CCDC88C-210ENST00000555995 REXO1Q8N1G1 1221 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-210ENST00000555995 NCOA5Q9HCD5 579 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-210ENST00000555995 UBIAD1Q9Y5Z9 338 aa23.6■■□□□ 1.37
CCDC88C-210ENST00000555995 DEXIO95424 95 aa23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 SREBF1P36956 1147 aa23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 PKN1Q16512 942 aa23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 HSDL1Q3SXM5 330 aa23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 CCDC155Q8N6L0 562 aa23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 ZFP91Q96JP5 570 aaPredicted RBP23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 SLKQ9H2G2 1235 aaPredicted RBP23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 NOD1Q9Y239 953 aa23.59■■□□□ 1.37
CCDC88C-210ENST00000555995 DOCK5Q9H7D0 1870 aa23.58■■□□□ 1.37
CCDC88C-210ENST00000555995 SP2Q02086 613 aa23.58■■□□□ 1.37
CCDC88C-210ENST00000555995 SEMA3FQ13275 785 aa23.58■■□□□ 1.37
CCDC88C-210ENST00000555995 PPP1R12CQ9BZL4 782 aa23.58■■□□□ 1.37
CCDC88C-210ENST00000555995 TRPV6Q9H1D0 765 aa23.58■■□□□ 1.37
CCDC88C-210ENST00000555995 JADE2Q9NQC1 790 aa23.58■■□□□ 1.37
CCDC88C-210ENST00000555995 ITGB8P26012 769 aa23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 PSEN2P49810 448 aa23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 MFSD10Q14728 455 aa23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 CYFIP1Q7L576 1253 aa23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 C7orf31Q8N865 590 aa23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 KAT2BQ92831 832 aa23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 NOC4LQ9BVI4 516 aaKnown RBP23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 ZNF215Q9UL58 517 aaPredicted RBP23.57■■□□□ 1.36
CCDC88C-210ENST00000555995 SLC34A2O95436 690 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 ZNF286BP0CG31 522 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 ITGB5P18084 799 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 CHMP4BP1P59074 171 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 STK3Q13188 491 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 KIAA0753Q2KHM9 967 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 GPR153Q6NV75 609 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 PSRC1Q6PGN9 363 aaPredicted RBP23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 MXRA8Q9BRK3 442 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 C22orf23Q9BZE7 217 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 STK36Q9NRP7 1315 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 TANC1Q9C0D5 1861 aa23.56■■□□□ 1.36
CCDC88C-210ENST00000555995 RANBP2P49792 3224 aaKnown RBP23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 HAS3O00219 553 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 PITPNM1O00562 1244 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 PFKFB2O60825 505 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms