RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 ABHD4Q8TB40 342 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 RNF32Q9H0A6 362 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 SIT1Q9Y3P8 196 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 ZNF891A8MT65 544 aaPredicted RBP8.03□□□□□ -1.12
LINC00643-204ENST00000555934 NKRFO15226 690 aaKnown RBP eCLIP8.03□□□□□ -1.12
LINC00643-204ENST00000555934 PDE6AP16499 860 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 POU3F2P20265 443 aaPredicted RBP8.03□□□□□ -1.12
LINC00643-204ENST00000555934 C16orf59Q7L2K0 433 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 OSTM1Q86WC4 334 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 PIP4K2CQ8TBX8 421 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 SHISA4Q96DD7 197 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 CELF4Q9BZC1 486 aaKnown RBP8.03□□□□□ -1.12
LINC00643-204ENST00000555934 TMX1Q9H3N1 280 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 EPB41L1Q9H4G0 881 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 X6R8D5 127 aa8.03□□□□□ -1.12
LINC00643-204ENST00000555934 DGKIO75912 1065 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 KRT37O76014 449 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 POU3F3P20264 500 aaPredicted RBP8.02□□□□□ -1.13
LINC00643-204ENST00000555934 CRY1Q16526 586 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 WWC2Q6AWC2 1192 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 OVCH1Q7RTY7 1134 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 CABP7Q86V35 215 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 RBM12BQ8IXT5 1001 aaKnown RBP8.02□□□□□ -1.13
LINC00643-204ENST00000555934 LILRA2Q8N149 483 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 Q8N1Y9 231 aa8.02□□□□□ -1.13
LINC00643-204ENST00000555934 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.02□□□□□ -1.13
LINC00643-204ENST00000555934 CBX4O00257 560 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 TRAF5O00463 557 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 GSTA4O15217 222 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 JAM2P57087 298 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 SPIRE1Q08AE8 756 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 DDX42Q86XP3 938 aaKnown RBP eCLIP8.01□□□□□ -1.13
LINC00643-204ENST00000555934 C2orf69Q8N8R5 385 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 ATL2Q8NHH9 583 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.01□□□□□ -1.13
LINC00643-204ENST00000555934 KIRREL1Q96J84 757 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 CABP5Q9NP86 173 aa8.01□□□□□ -1.13
LINC00643-204ENST00000555934 TCRBV5S4A2TA0A5A2 114 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 ZC3H12DA2A288 527 aaKnown RBP8□□□□□ -1.13
LINC00643-204ENST00000555934 NUDT19A8MXV4 375 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 WNT9AO14904 365 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 PNLIPP16233 465 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 ARL4AP40617 200 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 AFMP43652 599 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 CDKN1CP49918 316 aaPredicted RBP8□□□□□ -1.13
LINC00643-204ENST00000555934 SCNN1BP51168 640 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 IRAK1P51617 712 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 FAM50AQ14320 339 aaKnown RBP8□□□□□ -1.13
LINC00643-204ENST00000555934 ADGRF1Q5T601 910 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 MROH9Q5TGP6 573 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 ARHGAP36Q6ZRI8 547 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 OTOP3Q7RTS5 596 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 PTRH1Q86Y79 214 aaKnown RBP8□□□□□ -1.13
LINC00643-204ENST00000555934 AFAP1L2Q8N4X5 818 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 FLAD1Q8NFF5 587 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 CD244Q9BZW8 370 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 BRINP2Q9C0B6 783 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 ATP8A1Q9Y2Q0 1164 aa8□□□□□ -1.13
LINC00643-204ENST00000555934 PTPDC1A2A3K4 754 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 NPTXRO95502 500 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 AMY2AP04746 511 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 GLI4P10075 376 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 AMY2BP19961 511 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 ID4P47928 161 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 SART3Q15020 963 aaKnown RBP7.99□□□□□ -1.13
LINC00643-204ENST00000555934 STEAP3Q658P3 488 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 LHFPL2Q6ZUX7 228 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 ATG4DQ86TL0 474 aaPredicted RBP7.99□□□□□ -1.13
LINC00643-204ENST00000555934 PRPF38AQ8NAV1 312 aaKnown RBP7.99□□□□□ -1.13
LINC00643-204ENST00000555934 CHST14Q8NCH0 376 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 OR2W6PQ8NHA6 318 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 USP7Q93009 1102 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 GPR101Q96P66 508 aaPredicted RBP7.99□□□□□ -1.13
LINC00643-204ENST00000555934 SMURF1Q9HCE7 757 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 THG1LQ9NWX6 298 aaKnown RBP7.99□□□□□ -1.13
LINC00643-204ENST00000555934 DBR1Q9UK59 544 aaKnown RBP7.99□□□□□ -1.13
LINC00643-204ENST00000555934 ZKSCAN5Q9Y2L8 839 aa7.99□□□□□ -1.13
LINC00643-204ENST00000555934 ZNF561-AS1K7EIQ3 104 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 SLC27A2O14975 620 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 GAS7O60861 476 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 DBHP09172 617 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 HSP90B1P14625 803 aaKnown RBP7.98□□□□□ -1.13
LINC00643-204ENST00000555934 CDK11BP21127 795 aaKnown RBP7.98□□□□□ -1.13
LINC00643-204ENST00000555934 IL2P60568 153 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 SNX17Q15036 470 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 GPR19Q15760 415 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 FSTL4Q6MZW2 842 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 EP400NLQ6ZTU2 488 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 RIOX2Q8IUF8 465 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 RPUSD2Q8IZ73 545 aaKnown RBP7.98□□□□□ -1.13
LINC00643-204ENST00000555934 SH3RF2Q8TEC5 729 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 TNFRSF12AQ9NP84 129 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 CRTAC1Q9NQ79 661 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 H2AFY2Q9P0M6 372 aaPredicted RBP7.98□□□□□ -1.13
LINC00643-204ENST00000555934 MCM8Q9UJA3 840 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 DSEQ9UL01 958 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 YBX2Q9Y2T7 364 aaKnown RBP7.98□□□□□ -1.13
LINC00643-204ENST00000555934 HCFC2Q9Y5Z7 792 aa7.98□□□□□ -1.13
LINC00643-204ENST00000555934 F8W031 263 aaPredicted RBP7.97□□□□□ -1.13
LINC00643-204ENST00000555934 KRIT1O00522 736 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms