RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 APBA2Q99767 749 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 TMEM60Q9H2L4 133 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 DDX25Q9UHL0 483 aaKnown RBP10.86□□□□□ -0.67
LIMA1-211ENST00000552338 CNPY2Q9Y2B0 182 aa10.86□□□□□ -0.67
LIMA1-211ENST00000552338 NFASCO94856 1347 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 A0A1W2PQ27 194 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 A0A1W2PQ64 194 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 A0A1W2PQD8 194 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 SPATA31C2B4DYI2 1134 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 TNPO2O14787 897 aaKnown RBP10.85□□□□□ -0.67
LIMA1-211ENST00000552338 MSH4O15457 936 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 DHX15O43143 795 aaKnown RBP10.85□□□□□ -0.67
LIMA1-211ENST00000552338 PSMD10O75832 226 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 SNAI1O95863 264 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-211ENST00000552338 OR52Z1P0C646 297 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 MCM4P33991 863 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 MCM7P33993 719 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 CAP1Q01518 475 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 SEMA3FQ13275 785 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 NBR1Q14596 966 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 GNPTABQ3T906 1256 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 DPP9Q86TI2 863 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 PLA2G4DQ86XP0 818 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 KCTD17Q8N5Z5 321 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 CYP2W1Q8TAV3 490 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 PXYLP1Q8TE99 480 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 SLC5A5Q92911 643 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 AK8Q96MA6 479 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 TINF2Q9BSI4 451 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 FTOQ9C0B1 505 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMA1-211ENST00000552338 ABHD16BQ9H3Z7 469 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 VTA1Q9NP79 307 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 KCNH7Q9NS40 1196 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 LMBRD1Q9NUN5 540 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 SRRDQ9UH36 339 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 FBXO2Q9UK22 296 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-211ENST00000552338 PCDHA7Q9UN72 937 aa10.85□□□□□ -0.67
LIMA1-211ENST00000552338 LOXHD1Q8IVV2 1947 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 FIBPO43427 364 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 CUTAO60888 179 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 PTMSP20962 102 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 LONP1P36776 959 aaKnown RBP10.84□□□□□ -0.67
LIMA1-211ENST00000552338 SPIRE1Q08AE8 756 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 PPP2R5CQ13362 524 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 STK38Q15208 465 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 IL17AQ16552 155 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 CALCRLQ16602 461 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 PRR16Q569H4 304 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 WDR78Q5VTH9 848 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 TAPT1Q6NXT6 567 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 CCDC62Q6P9F0 684 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 ARMCX2Q7L311 632 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 OTOP1Q7RTM1 612 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 KRI1Q8N9T8 703 aaKnown RBP10.84□□□□□ -0.67
LIMA1-211ENST00000552338 ZNF296Q8WUU4 475 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-211ENST00000552338 CHAMP1Q96JM3 812 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 TBC1D22BQ9NU19 505 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 STK24Q9Y6E0 443 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 DOCK5Q9H7D0 1870 aa10.84□□□□□ -0.67
LIMA1-211ENST00000552338 MYH9P35579 1960 aaKnown RBP10.84□□□□□ -0.67
LIMA1-211ENST00000552338 ATG7O95352 703 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 ARP10275 920 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 KCNA2P16389 499 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 MUTP22033 750 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 CMA1P23946 247 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 ZNF76P36508 570 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 FLT3LGP49771 235 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 UBE2HP62256 183 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 NKX3-2P78367 333 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 PDE4DQ08499 809 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 MTMR1Q13613 665 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 HYIQ5T013 277 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 DTHD1Q6ZMT9 781 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 GIMAP8Q8ND71 665 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-211ENST00000552338 RDM1Q8NG50 284 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 BEGAINQ9BUH8 593 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 WDR11Q9BZH6 1224 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 ARHGAP39Q9C0H5 1083 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 CCSER1Q9C0I3 900 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 AGO4Q9HCK5 861 aaKnown RBP10.83□□□□□ -0.68
LIMA1-211ENST00000552338 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-211ENST00000552338 PCDHA12Q9UN75 941 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 Q9Y3F1 56 aa10.83□□□□□ -0.68
LIMA1-211ENST00000552338 DDX11L8A8MPP1 907 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 GOLGA6L22H0YM25 854 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 IPO5O00410 1097 aaKnown RBP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 NKRFO15226 690 aaKnown RBP eCLIP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 ZNF865P0CJ78 1059 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 MYCLP12524 364 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 ATP2B1P20020 1258 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 UBXN2AP68543 259 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 RESP18Q5W5W9 173 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 IQSEC1Q6DN90 963 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 ELOA2Q8IYF1 753 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 EMID1Q96A84 441 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 RAB34Q9BZG1 259 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 TTC12Q9H892 705 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 FLRT1Q9NZU1 646 aa10.82□□□□□ -0.68
LIMA1-211ENST00000552338 DDX41Q9UJV9 622 aaKnown RBP10.82□□□□□ -0.68
LIMA1-211ENST00000552338 VAV3Q9UKW4 847 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms