RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 ZNF326Q5BKZ1 582 aaKnown RBP3.51□□□□□ -1.85
PTCH1-223ENST00000551623 LINC00116Q8NCU8 138 aa3.51□□□□□ -1.85
PTCH1-223ENST00000551623 NUP43Q8NFH3 380 aa3.51□□□□□ -1.85
PTCH1-223ENST00000551623 KISS1RQ969F8 398 aaPredicted RBP3.51□□□□□ -1.85
PTCH1-223ENST00000551623 EAF1Q96JC9 268 aaPredicted RBP3.51□□□□□ -1.85
PTCH1-223ENST00000551623 ST6GALNAC2Q9UJ37 374 aa3.51□□□□□ -1.85
PTCH1-223ENST00000551623 ACSL6Q9UKU0 697 aa3.51□□□□□ -1.85
PTCH1-223ENST00000551623 TNS2Q63HR2 1409 aa3.51□□□□□ -1.85
PTCH1-223ENST00000551623 SPATA31E1Q6ZUB1 1445 aa3.51□□□□□ -1.85
PTCH1-223ENST00000551623 GPRASP1Q5JY77 1395 aa3.51□□□□□ -1.85
PTCH1-223ENST00000551623 NHSQ6T4R5 1651 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 TOPAZ1Q8N9V7 1692 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 GIPC1O14908 333 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 SYPP08247 313 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 CDSNQ15517 529 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 PTF1AQ7RTS3 328 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 SLCO6A1Q86UG4 719 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 SLFN12Q8IYM2 578 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 ZNF655Q8N720 491 aaPredicted RBP3.5□□□□□ -1.85
PTCH1-223ENST00000551623 NLGN2Q8NFZ4 835 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 SSBP3Q9BWW4 388 aaPredicted RBP3.5□□□□□ -1.85
PTCH1-223ENST00000551623 C11orf21Q9P2W6 132 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 WWC3Q9ULE0 1092 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 FAN1Q9Y2M0 1017 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 CORINQ9Y5Q5 1042 aa3.5□□□□□ -1.85
PTCH1-223ENST00000551623 POLR3AO14802 1390 aaPredicted RBP3.5□□□□□ -1.85
PTCH1-223ENST00000551623 KIF1BO60333 1816 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 PRR36Q9H6K5 1346 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 PXDNLA1KZ92 1463 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 A0A1W2PQ45 241 aaPredicted RBP3.49□□□□□ -1.85
PTCH1-223ENST00000551623 A0A1W2PQY0 241 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 TREHO43280 583 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 AMHP03971 560 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 PLCG1P19174 1290 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 RGS19P49795 217 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 RPL6Q02878 288 aaKnown RBP3.49□□□□□ -1.85
PTCH1-223ENST00000551623 FSTL1Q12841 308 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 TMEM201Q5SNT2 666 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 B4GALNT3Q6L9W6 998 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 ZNF761Q86XN6 746 aaPredicted RBP3.49□□□□□ -1.85
PTCH1-223ENST00000551623 FBF1Q8TES7 1133 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 RNF19AQ9NV58 838 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 ING1Q9UK53 422 aaPredicted RBP3.49□□□□□ -1.85
PTCH1-223ENST00000551623 PLA2G2DQ9UNK4 145 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 TTF2Q9UNY4 1162 aaKnown RBP3.49□□□□□ -1.85
PTCH1-223ENST00000551623 CD2APQ9Y5K6 639 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 HS3ST3A1Q9Y663 406 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 ABCC6O95255 1503 aa3.49□□□□□ -1.85
PTCH1-223ENST00000551623 PNPLA7Q6ZV29 1317 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 ADGRF5Q8IZF2 1346 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 ADGRB1O14514 1584 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 USP17L7P0C7H9 530 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 POLD1P28340 1107 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 SARSP49591 514 aaKnown RBP3.48□□□□□ -1.85
PTCH1-223ENST00000551623 DDB1Q16531 1140 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 SMN1Q16637 294 aaKnown RBP3.48□□□□□ -1.85
PTCH1-223ENST00000551623 TSNAXIP1Q2TAA8 658 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 ZNF575Q86XF7 245 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 CCDC74BQ96LY2 380 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 RNF38Q9H0F5 515 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 MIR1-1HGQ9H1L0 117 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 C12orf49Q9H741 205 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 ERVK13-1Q9NX77 482 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 IMPACTQ9P2X3 320 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 FAM8A1Q9UBU6 413 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 WNK3Q9BYP7 1800 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 SLIT3O75094 1523 aa3.48□□□□□ -1.85
PTCH1-223ENST00000551623 RGPD8O14715 1765 aaPredicted RBP3.48□□□□□ -1.85
PTCH1-223ENST00000551623 QRICH2Q9H0J4 1663 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 PCNTO95613 3336 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 MC3RP41968 323 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 FMR1Q06787 632 aaKnown RBP eCLIP3.47□□□□□ -1.85
PTCH1-223ENST00000551623 HNRNPA0Q13151 305 aaKnown RBP3.47□□□□□ -1.85
PTCH1-223ENST00000551623 CHRNA2Q15822 529 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 AGMOQ6ZNB7 445 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 TMC3Q7Z5M5 1100 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 CDK5RAP1Q96SZ6 601 aaKnown RBP3.47□□□□□ -1.85
PTCH1-223ENST00000551623 C14orf93Q9H972 538 aaKnown RBP3.47□□□□□ -1.85
PTCH1-223ENST00000551623 NTMQ9P121 344 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 DCTN4Q9UJW0 460 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 GNEQ9Y223 722 aaKnown RBP3.47□□□□□ -1.85
PTCH1-223ENST00000551623 HCFC2Q9Y5Z7 792 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 KIAA1210Q9ULL0 1709 aa3.47□□□□□ -1.85
PTCH1-223ENST00000551623 WDR17Q8IZU2 1322 aa3.46□□□□□ -1.85
PTCH1-223ENST00000551623 LTBP3Q9NS15 1303 aa3.46□□□□□ -1.85
PTCH1-223ENST00000551623 CYBBP04839 570 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 DBHP09172 617 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 HSPA1AP0DMV8 641 aaKnown RBP3.46□□□□□ -1.86
PTCH1-223ENST00000551623 HSPA1BP0DMV9 641 aaKnown RBP3.46□□□□□ -1.86
PTCH1-223ENST00000551623 NCAM1P13591 858 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 ENDOUP21128 410 aaKnown RBP3.46□□□□□ -1.86
PTCH1-223ENST00000551623 CHMP4BP1P59074 171 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 TGFB2P61812 414 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 PAQR3Q6TCH7 311 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 GLB1LQ6UWU2 654 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 LIMS2Q7Z4I7 341 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 PMFBP1Q8TBY8 1022 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 JMJD8Q96S16 334 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 USP35Q9P2H5 1018 aa3.46□□□□□ -1.86
PTCH1-223ENST00000551623 INVSQ9Y283 1065 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms