RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 CCDC144BQ3MJ40 725 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 SLFNL1Q499Z3 407 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 SNRNP48Q6IEG0 339 aaKnown RBP8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 CPLX2Q6PUV4 134 aaKnown RBP8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 SYNE3Q6ZMZ3 975 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 MFSD6Q6ZSS7 791 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 Q6ZUG5 572 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 SPRED2Q7Z698 418 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 RIOX2Q8IUF8 465 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 GJD3Q8N144 294 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 TMTC2Q8N394 836 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 DDX11Q96FC9 970 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 TMEM87BQ96K49 555 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 MTA3Q9BTC8 594 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 SH2D4AQ9H788 454 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 ZNF287Q9HBT7 754 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 MCM9Q9NXL9 1143 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 MTUS1Q9ULD2 1270 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 DIS3Q9Y2L1 958 aaKnown RBP8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 A0A0G2JMZ2 1700 aa8.23□□□□□ -1.09
DEPDC4-208ENST00000549341 ZFHX2Q9C0A1 2572 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 GSG1L2A8MUP6 293 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 VWA5AO00534 786 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 WDR46O15213 610 aaKnown RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 B4GALT4O60513 344 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 CD4P01730 458 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 SNRPBP14678 240 aaKnown RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 AKR1B1P15121 316 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 SMPD1P17405 629 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 KCNA5P22460 613 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 PTGS1P23219 599 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 COPB2P35606 906 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 HAND2P61296 217 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 PSMC6P62333 389 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 ACVR2BQ13705 512 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 FAM83BQ5T0W9 1011 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 TMEM179Q6ZVK1 233 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 LCORLQ8N3X6 602 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 FBXL16Q8N461 479 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 FAM160A2Q8N612 972 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 ZNF274Q96GC6 653 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 UPF3AQ9H1J1 476 aaKnown RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 VCPKMTQ9H867 229 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 TOMM22Q9NS69 142 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 ARPP21Q9UBL0 812 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 ZNF214Q9UL59 606 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 NAP1L2Q9ULW6 460 aaPredicted RBP8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 ATP6V1DQ9Y5K8 247 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 CFAP54Q96N23 3096 aa8.22□□□□□ -1.09
DEPDC4-208ENST00000549341 PLXNA1Q9UIW2 1896 aa8.21□□□□□ -1.09
DEPDC4-208ENST00000549341 MINDY4BA8MYZ0 360 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 PRC1O43663 620 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 CYP2C9P11712 490 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 ALADP13716 330 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 IL9P15248 144 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 GJA9P57773 515 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 HMGN5P82970 282 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 EXOSC10Q01780 885 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 TAP1Q03518 808 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 PDE4BQ07343 736 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 PPARAQ07869 468 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 ITGA7Q13683 1181 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 NFKBIBQ15653 356 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 CCDC178Q5BJE1 867 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 ARMCX2Q7L311 632 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 TLK2Q86UE8 772 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 CCDC83Q8IWF9 413 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 RPUSD2Q8IZ73 545 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 MSL3Q8N5Y2 521 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 FAM184AQ8NB25 1140 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 STAG1Q8WVM7 1258 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 ANKS1AQ92625 1134 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 ESR2Q92731 530 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 BRF1Q92994 677 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 DYNLL2Q96FJ2 89 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 NUP88Q99567 741 aaPredicted RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 RIOK1Q9BRS2 568 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 LLPHQ9BRT6 129 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 TEX13BQ9BXU2 312 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 UBE2ZQ9H832 354 aaPredicted RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 HOMER2Q9NSB8 354 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 TRMT13Q9NUP7 481 aaKnown RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 ANAPC4Q9UJX5 808 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 PPP1R9AQ9ULJ8 1098 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 CTDP1Q9Y5B0 961 aaPredicted RBP8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 BRWD1Q9NSI6 2320 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 ZNF536O15090 1300 aa8.21□□□□□ -1.1
DEPDC4-208ENST00000549341 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 CCDC69A6NI79 296 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 DCXO43602 365 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 CDKL5O76039 1030 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 ACTN1P12814 892 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 CPA1P15085 419 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 POU3F3P20264 500 aaPredicted RBP8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 DDIT3P35638 169 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 GABPAQ06546 454 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 FSCN1Q16658 493 aaKnown RBP8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 SBK1Q52WX2 424 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 NFXL1Q6ZNB6 911 aa8.2□□□□□ -1.1
DEPDC4-208ENST00000549341 STOX1Q6ZVD7 989 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms