RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 WDR11Q9BZH6 1224 aa18.12■□□□□ 0.49
PRPF40A-212ENST00000545856 TBC1D22BQ9NU19 505 aa18.12■□□□□ 0.49
PRPF40A-212ENST00000545856 TFIP11Q9UBB9 837 aaKnown RBP18.12■□□□□ 0.49
PRPF40A-212ENST00000545856 COBLO75128 1261 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 ITGB5P18084 799 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 PRR16Q569H4 304 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 ADALQ6DHV7 355 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 POTEDQ86YR6 584 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 KCTD17Q8N5Z5 321 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 IL31RAQ8NI17 732 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 PYM1Q9BRP8 204 aaKnown RBP18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 R3HDMLQ9H3Y0 253 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 ABHD16BQ9H3Z7 469 aa18.11■□□□□ 0.49
PRPF40A-212ENST00000545856 NFASCO94856 1347 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 GOLGA6L4A6NEF3 574 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 SLC37A4O43826 429 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 MARCH6O60337 910 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 MYCLP12524 364 aaPredicted RBP18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 MCM4P33991 863 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 ME1P48163 572 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 UBE2HP62256 183 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 FOXD4L6Q3SYB3 417 aaPredicted RBP18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 FOXD4L3Q6VB84 417 aaPredicted RBP18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 ARMCX2Q7L311 632 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 SLC5A5Q92911 643 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 KCNH7Q9NS40 1196 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 TCEAL9Q9UHQ7 104 aa18.1■□□□□ 0.49
PRPF40A-212ENST00000545856 ZSWIM8A7E2V4 1837 aa18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 RBM47A0AV96 593 aaKnown RBP18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 WNT7AO00755 349 aa18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 IGHA2P01877 340 aa18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 CEBPZQ03701 1054 aaKnown RBP18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 NBR1Q14596 966 aa18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 RDM1Q8NG50 284 aa18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 SCFD2Q8WU76 684 aa18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 FTOQ9C0B1 505 aaKnown RBP eCLIP18.09■□□□□ 0.492e-6■■■■□ 19.3
PRPF40A-212ENST00000545856 SRRDQ9UH36 339 aa18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 FBXO2Q9UK22 296 aaPredicted RBP18.09■□□□□ 0.49
PRPF40A-212ENST00000545856 SPATA31C2B4DYI2 1134 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 IPO5O00410 1097 aaKnown RBP18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 MSH4O15457 936 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 MBD3O95983 291 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 UBXN2AP68543 259 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 NEDD9Q14511 834 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 IGSF22Q8N9C0 903 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 PXYLP1Q8TE99 480 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 ZNF577Q9BSK1 485 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 TMEM60Q9H2L4 133 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 PCDHA12Q9UN75 941 aa18.08■□□□□ 0.49
PRPF40A-212ENST00000545856 WDR81Q562E7 1941 aa18.08■□□□□ 0.48
PRPF40A-212ENST00000545856 FAM237AA0A1B0GTK4 181 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 NKRFO15226 690 aaKnown RBP eCLIP18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 MUTP22033 750 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 CMA1P23946 247 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 TXLNAP40222 546 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 KRT76Q01546 638 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 PPP2R5CQ13362 524 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 TTLL4Q14679 1199 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 ERMNQ8TAM6 284 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 ZNF296Q8WUU4 475 aaPredicted RBP18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 HAS1Q92839 578 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 PURBQ96QR8 312 aaKnown RBP18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 SDF4Q9BRK5 362 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 TEKT3Q9BXF9 490 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 AGO4Q9HCK5 861 aaKnown RBP18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 PCDHA7Q9UN72 937 aa18.07■□□□□ 0.48
PRPF40A-212ENST00000545856 GAS7O60861 476 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 PSMD10O75832 226 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 RGS20O76081 388 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 CTGFP29279 349 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 SFNP31947 248 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 AXDND1Q5T1B0 1012 aaPredicted RBP18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 LRCH2Q5VUJ6 765 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 HAUS3Q68CZ6 603 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 NPLOC4Q8TAT6 608 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 NEK9Q8TD19 979 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 TTC12Q9H892 705 aaPredicted RBP18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 MRVI1Q9Y6F6 885 aa18.06■□□□□ 0.48
PRPF40A-212ENST00000545856 FLT3LGP49771 235 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 SKOR2Q2VWA4 1001 aaPredicted RBP18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 MFSD14CQ5VZR4 134 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 ZNF746Q6NUN9 644 aaPredicted RBP18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 SMAP1Q8IYB5 467 aaPredicted RBP18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 CYP2W1Q8TAV3 490 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 CD99L2Q8TCZ2 262 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 MRPS27Q92552 414 aaKnown RBP18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 KATNBL1Q9H079 304 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 LMBRD1Q9NUN5 540 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 FAM13BQ9NYF5 915 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 KDM3AQ9Y4C1 1321 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 PCNTO95613 3336 aa18.05■□□□□ 0.48
PRPF40A-212ENST00000545856 VWA3AA6NCI4 1184 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 ARP10275 920 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 KCNA2P16389 499 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 CYP2B6P20813 491 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 MARCKSP29966 332 aaPredicted RBP18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 TXKP42681 527 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 JAK3P52333 1124 aa18.04■□□□□ 0.48
PRPF40A-212ENST00000545856 PRKCZQ05513 592 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms