RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 BCS1LQ9Y276 419 aa16.66■□□□□ 0.26
USP28-214ENST00000545540 COL16A1Q07092 1604 aaPredicted RBP16.65■□□□□ 0.26
USP28-214ENST00000545540 TMEM266Q2M3C6 531 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 AFAP1L1Q8TED9 768 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 TBC1D5Q92609 795 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 RAD54LQ92698 747 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 HAS1Q92839 578 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 LRRC4BQ9NT99 713 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 SFI1A8K8P3 1242 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 PPP4CP60510 307 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 UNC13DQ70J99 1090 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 PANK4Q9NVE7 773 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 DAGLAQ9Y4D2 1042 aa16.65■□□□□ 0.26
USP28-214ENST00000545540 GPR75-ASB3A0A0A6YYF3 556 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 LAD1O00515 517 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 TLR2O60603 784 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 KRT18P05783 430 aaKnown RBP16.64■□□□□ 0.25
USP28-214ENST00000545540 ATP1A2P50993 1020 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 CYP4A11Q02928 519 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 EHHADHQ08426 723 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 NFIAQ12857 509 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 COASYQ13057 564 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 TRMT1LQ7Z2T5 733 aaKnown RBP16.64■□□□□ 0.25
USP28-214ENST00000545540 CCDC170Q8IYT3 715 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 PCDHA12Q9UN75 941 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 LEMD3Q9Y2U8 911 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 COL14A1Q05707 1796 aaKnown RBP16.64■□□□□ 0.25
USP28-214ENST00000545540 POTEFA5A3E0 1075 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 GOLGA6BA6NDN3 693 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 TULP2O00295 520 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 POTEIP0CG38 1075 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 PSMC6P62333 389 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 MAN2A1Q16706 1144 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 USH1GQ495M9 461 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 GALNT17Q6IS24 598 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 POTEGQ6S5H5 508 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 POTEEQ6S8J3 1075 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 LRRC55Q6ZSA7 311 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 ZSCAN29Q8IWY8 852 aaPredicted RBP16.64■□□□□ 0.25
USP28-214ENST00000545540 BAP1Q92560 729 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 ZC3H4Q9UPT8 1303 aaKnown RBP16.64■□□□□ 0.25
USP28-214ENST00000545540 KRT14P02533 472 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 FAM153BP0C7A2 387 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 CASP5P51878 434 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 FAM153CQ494X1 144 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 ARL8AQ96BM9 186 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 FAM153AQ9UHL3 310 aa16.64■□□□□ 0.25
USP28-214ENST00000545540 SCN7AQ01118 1682 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 NOC3LQ8WTT2 800 aaKnown RBP16.63■□□□□ 0.25
USP28-214ENST00000545540 TLR10Q9BXR5 811 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 JRKLQ9Y4A0 524 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 PALMO75781 387 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 CKAP4Q07065 602 aaKnown RBP16.63■□□□□ 0.25
USP28-214ENST00000545540 KLHL7Q8IXQ5 586 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 MYOCDQ8IZQ8 938 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 ZNF287Q9HBT7 754 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 CNTNAP4Q9C0A0 1308 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 PRPF6O94906 941 aaKnown RBP16.63■□□□□ 0.25
USP28-214ENST00000545540 KLRC1P26715 233 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 CARSP49589 748 aaKnown RBP16.63■□□□□ 0.25
USP28-214ENST00000545540 FAM83BQ5T0W9 1011 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 EHBP1Q8NDI1 1231 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 TRIM58Q8NG06 486 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 CENPHQ9H3R5 247 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 NFU1Q9UMS0 254 aa16.63■□□□□ 0.25
USP28-214ENST00000545540 A0A087X0T9 212 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 GLI1P08151 1106 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 FAM228BP0C875 321 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 PABPC4Q13310 644 aaKnown RBP eCLIP16.62■□□□□ 0.25
USP28-214ENST00000545540 FAM26FQ5R3K3 315 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 SRLQ86TD4 932 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 PSTPIP2Q9H939 334 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 USP40Q9NVE5 1235 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 SAMM50Q9Y512 469 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 GOLGA6CA6NDK9 693 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 GOLGA6DP0CG33 693 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 IKQ13123 557 aaPredicted RBP16.62■□□□□ 0.25
USP28-214ENST00000545540 TCERG1LQ5VWI1 586 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 GPBP1Q86WP2 473 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 CERS5Q8N5B7 392 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 TBC1D16Q8TBP0 767 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 RIOX1Q9H6W3 641 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 GOLGA6AQ9NYA3 693 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 KIAA1551Q9HCM1 1747 aa16.62■□□□□ 0.25
USP28-214ENST00000545540 NOL4O94818 638 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 MYL1P05976 194 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 GUCY2DQ02846 1103 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 GJB7Q6PEY0 223 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 RETREG2Q8NC44 543 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 DNAJC19Q96DA6 116 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 LZTS2Q9BRK4 669 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 CUEDC2Q9H467 287 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.61■□□□□ 0.252e-6■■■■■ 149.1
USP28-214ENST00000545540 PODXL2Q9NZ53 605 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 HYOU1Q9Y4L1 999 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 SLC9A1P19634 815 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 KCNA1Q09470 495 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 KIAA0753Q2KHM9 967 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 MAP9Q49MG5 647 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 KLHDC7AQ5VTJ3 777 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms