RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SYCP1Q15431 976 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 SH3D19Q5HYK7 790 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 CT47A1Q5JQC4 288 aaPredicted RBP16.03■□□□□ 0.16
VPS33A-209ENST00000544349 SYT10Q6XYQ8 523 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 MCF2L2Q86YR7 1114 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 LRRN4CLQ8ND94 238 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 SNX29Q8TEQ0 813 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 TMOD4Q9NZQ9 345 aa16.03■□□□□ 0.16
VPS33A-209ENST00000544349 OTOFQ9HC10 1997 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 SCN4AP35499 1836 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 DSG3P32926 999 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 KIF18AQ8NI77 898 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 CYP2W1Q8TAV3 490 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 CDK5RAP3Q96JB5 506 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 FAM20AQ96MK3 541 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 UIMC1Q96RL1 719 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 RMND1Q9NWS8 449 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 STK17AQ9UEE5 414 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 CSADQ9Y600 493 aa16.02■□□□□ 0.16
VPS33A-209ENST00000544349 WDR90Q96KV7 1748 aa16.02■□□□□ 0.15
VPS33A-209ENST00000544349 IGLV3-22A0A075B6J6 115 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 ERCC5P28715 1186 aaPredicted RBP16.01■□□□□ 0.15
VPS33A-209ENST00000544349 IREB2P48200 963 aaKnown RBP16.01■□□□□ 0.15
VPS33A-209ENST00000544349 STX17P56962 302 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 COG2Q14746 738 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 CATSPERGQ6ZRH7 1159 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 RBM46Q8TBY0 533 aaKnown RBP16.01■□□□□ 0.15
VPS33A-209ENST00000544349 CDCA5Q96FF9 252 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 WNK4Q96J92 1243 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 BLOC1S4Q9NUP1 217 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 ADAMTS5Q9UNA0 930 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 SYNRGQ9UMZ2 1314 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 COL11A1P12107 1806 aaPredicted RBP16.01■□□□□ 0.15
VPS33A-209ENST00000544349 MSH4O15457 936 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 TMEM119Q4V9L6 283 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 MUM1L1Q5H9M0 696 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 KLHL10Q6JEL2 608 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 APTXQ7Z2E3 356 aaKnown RBP16.01■□□□□ 0.15
VPS33A-209ENST00000544349 SAMD3Q8N6K7 520 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 REPS2Q8NFH8 660 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 C7orf25Q9BPX7 421 aa16.01■□□□□ 0.15
VPS33A-209ENST00000544349 TAF1DQ9H5J8 278 aaPredicted RBP16.01■□□□□ 0.15
VPS33A-209ENST00000544349 MAP3K20Q9NYL2 800 aaKnown RBP16.01■□□□□ 0.15
VPS33A-209ENST00000544349 PPP1R3GB7ZBB8 358 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 KLRC4O43908 158 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 NF2P35240 595 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 UBXN2AP68543 259 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 AMPD3Q01432 767 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 SPIRE1Q08AE8 756 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 KCNB1Q14721 858 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 ECM1Q16610 540 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 HYIQ5T013 277 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 ZNF658Q5TYW1 1059 aaPredicted RBP16■□□□□ 0.15
VPS33A-209ENST00000544349 TC2NQ8N9U0 490 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 TRIM9Q9C026 710 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 HOMER2Q9NSB8 354 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 COL20A1Q9P218 1284 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 PTPRFP10586 1907 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 IQCA1LA6NCM1 817 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 POTECB2RU33 542 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 KIF2AO00139 706 aaPredicted RBP16■□□□□ 0.15
VPS33A-209ENST00000544349 SLC26A4O43511 780 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 COBLO75128 1261 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 DHX8Q14562 1220 aaKnown RBP16■□□□□ 0.15
VPS33A-209ENST00000544349 SV2BQ7L1I2 683 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 REXO1L1PQ8IX06 675 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 LARP4BQ92615 738 aaKnown RBP16■□□□□ 0.15
VPS33A-209ENST00000544349 TRERF1Q96PN7 1200 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 RABGAP1Q9Y3P9 1069 aa16■□□□□ 0.15
VPS33A-209ENST00000544349 RBBP6Q7Z6E9 1792 aaKnown RBP15.99■□□□□ 0.15
VPS33A-209ENST00000544349 KDM3AQ9Y4C1 1321 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 NRDCO43847 1150 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 CDK11BP21127 795 aaKnown RBP15.99■□□□□ 0.15
VPS33A-209ENST00000544349 CCT6AP40227 531 aaKnown RBP15.99■□□□□ 0.15
VPS33A-209ENST00000544349 OAZ1P54368 228 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 ADKP55263 362 aaKnown RBP15.99■□□□□ 0.15
VPS33A-209ENST00000544349 SEMA3FQ13275 785 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 ELF2Q15723 593 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 KMT5BQ4FZB7 885 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 EAPPQ56P03 285 aaPredicted RBP15.99■□□□□ 0.15
VPS33A-209ENST00000544349 TRIM65Q6PJ69 517 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 CNKSR2Q8WXI2 1034 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 RAD54LQ92698 747 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 L2HGDHQ9H9P8 463 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 RPTORQ8N122 1335 aa15.99■□□□□ 0.15
VPS33A-209ENST00000544349 A0A1B0GTH6 734 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 SPDYE4A6NLX3 237 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 TEX33O43247 280 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 STAT3P40763 770 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 MCM6Q14566 821 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 CEP55Q53EZ4 464 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 SPECC1LQ69YQ0 1117 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 KCNK18Q7Z418 384 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 ANKRD13AQ8IZ07 590 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 SYTL5Q8TDW5 730 aaPredicted RBP15.98■□□□□ 0.15
VPS33A-209ENST00000544349 NT5C3AQ9H0P0 336 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 HOXC10Q9NYD6 342 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 MYPNQ86TC9 1320 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 RHOBTB3O94955 611 aa15.98■□□□□ 0.15
VPS33A-209ENST00000544349 CBX1P83916 185 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms