RNA–Protein interactions for RNA: ENST00000544093.5

CHFR-222, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 942 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-222ENST00000544093 HIPK3Q9H422 1215 aa26.71■■□□□ 1.87
CHFR-222ENST00000544093 SOX1O00570 391 aaPredicted RBP26.7■■□□□ 1.86
CHFR-222ENST00000544093 PPFIA4O75335 1185 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 GGPS1O95749 300 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 NEDD9Q14511 834 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 SHHQ15465 462 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 FAM47CQ5HY64 1035 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 CDHR1Q96JP9 859 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 MLXIPQ9HAP2 919 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 BARHL2Q9NY43 387 aa26.7■■□□□ 1.86
CHFR-222ENST00000544093 SPATA31C2B4DYI2 1134 aa26.69■■□□□ 1.86
CHFR-222ENST00000544093 FOSP01100 380 aaPredicted RBP26.69■■□□□ 1.86
CHFR-222ENST00000544093 HOXD8P13378 290 aaPredicted RBP26.69■■□□□ 1.86
CHFR-222ENST00000544093 ADD1P35611 737 aaKnown RBP26.69■■□□□ 1.86
CHFR-222ENST00000544093 SESTD1Q86VW0 696 aa26.69■■□□□ 1.86
CHFR-222ENST00000544093 SPATA33Q96N06 139 aa26.69■■□□□ 1.86
CHFR-222ENST00000544093 PPP1R12CQ9BZL4 782 aa26.69■■□□□ 1.86
CHFR-222ENST00000544093 RIC8AQ9NPQ8 531 aa26.69■■□□□ 1.86
CHFR-222ENST00000544093 ADCY7P51828 1080 aa26.68■■□□□ 1.86
CHFR-222ENST00000544093 GIMAP8Q8ND71 665 aaPredicted RBP26.68■■□□□ 1.86
CHFR-222ENST00000544093 CCDC12Q8WUD4 166 aaPredicted RBP26.68■■□□□ 1.86
CHFR-222ENST00000544093 LRCH3Q96II8 777 aa26.68■■□□□ 1.86
CHFR-222ENST00000544093 SENP7Q9BQF6 1050 aa26.68■■□□□ 1.86
CHFR-222ENST00000544093 LAMA2P24043 3122 aaKnown RBP26.68■■□□□ 1.86
CHFR-222ENST00000544093 STXBP3O00186 592 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 F2P00734 622 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 SP2Q02086 613 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 PFKFB3Q16875 520 aaPredicted RBP26.67■■□□□ 1.86
CHFR-222ENST00000544093 C9orf50Q5SZB4 431 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 METTL7BQ6UX53 244 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 GPRASP2Q96D09 838 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 NOC4LQ9BVI4 516 aaKnown RBP26.67■■□□□ 1.86
CHFR-222ENST00000544093 TRMT13Q9NUP7 481 aaKnown RBP26.67■■□□□ 1.86
CHFR-222ENST00000544093 RTEL1Q9NZ71 1219 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 PCDHA6Q9UN73 950 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 PCDHA8Q9Y5H6 950 aa26.67■■□□□ 1.86
CHFR-222ENST00000544093 SCG2P13521 617 aa26.66■■□□□ 1.86
CHFR-222ENST00000544093 ANAPC15P60006 121 aa26.66■■□□□ 1.86
CHFR-222ENST00000544093 AKAP17AQ02040 695 aaKnown RBP26.66■■□□□ 1.86
CHFR-222ENST00000544093 UBE2SQ16763 222 aa26.66■■□□□ 1.86
CHFR-222ENST00000544093 HSDL1Q3SXM5 330 aa26.66■■□□□ 1.86
CHFR-222ENST00000544093 PSRC1Q6PGN9 363 aaPredicted RBP26.66■■□□□ 1.86
CHFR-222ENST00000544093 KAT2BQ92831 832 aa26.66■■□□□ 1.86
CHFR-222ENST00000544093 RNPC3Q96LT9 517 aaKnown RBP26.66■■□□□ 1.86
CHFR-222ENST00000544093 NOD1Q9Y239 953 aa26.66■■□□□ 1.86
CHFR-222ENST00000544093 SMCO2A6NFE2 343 aa26.65■■□□□ 1.86
CHFR-222ENST00000544093 NOP56O00567 594 aaKnown RBP26.65■■□□□ 1.86
CHFR-222ENST00000544093 MAFGO15525 162 aa26.65■■□□□ 1.86
CHFR-222ENST00000544093 PRPF3O43395 683 aaKnown RBP26.65■■□□□ 1.86
CHFR-222ENST00000544093 CYP2C18P33260 490 aa26.65■■□□□ 1.86
CHFR-222ENST00000544093 AP3B2Q13367 1082 aa26.65■■□□□ 1.86
CHFR-222ENST00000544093 MCTP2Q6DN12 878 aa26.65■■□□□ 1.86
CHFR-222ENST00000544093 ZFP91Q96JP5 570 aaPredicted RBP26.65■■□□□ 1.86
CHFR-222ENST00000544093 ESYT2A0FGR8 921 aa26.64■■□□□ 1.86
CHFR-222ENST00000544093 CSF2RAP15509 400 aa26.64■■□□□ 1.86
CHFR-222ENST00000544093 PDIA3P30101 505 aaKnown RBP26.64■■□□□ 1.86
CHFR-222ENST00000544093 EPHB4P54760 987 aa26.64■■□□□ 1.86
CHFR-222ENST00000544093 TYW1BQ6NUM6 668 aa26.64■■□□□ 1.86
CHFR-222ENST00000544093 C7orf31Q8N865 590 aa26.64■■□□□ 1.86
CHFR-222ENST00000544093 RNF26Q9BY78 433 aaPredicted RBP26.64■■□□□ 1.86
CHFR-222ENST00000544093 PITPNM1O00562 1244 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 IFNAR1P17181 557 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 PSEN2P49810 448 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 CHMP4BP1P59074 171 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 BFSP2Q13515 415 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 TOB2Q14106 344 aaPredicted RBP26.63■■□□□ 1.85
CHFR-222ENST00000544093 MFSD10Q14728 455 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 RPUSD2Q8IZ73 545 aaKnown RBP26.63■■□□□ 1.85
CHFR-222ENST00000544093 CCDC155Q8N6L0 562 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 ZNF274Q96GC6 653 aaPredicted RBP26.63■■□□□ 1.85
CHFR-222ENST00000544093 IL23AQ9NPF7 189 aa26.63■■□□□ 1.85
CHFR-222ENST00000544093 HAS3O00219 553 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 ZNF286BP0CG31 522 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 SMAD3P84022 425 aaKnown RBP26.62■■□□□ 1.85
CHFR-222ENST00000544093 SEMA3FQ13275 785 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 MTMR1Q13613 665 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 PTGISQ16647 500 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 KIAA0753Q2KHM9 967 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 UPF3BQ9BZI7 483 aaKnown RBP26.62■■□□□ 1.85
CHFR-222ENST00000544093 MTIF3Q9H2K0 278 aaKnown RBP26.62■■□□□ 1.85
CHFR-222ENST00000544093 PDRG1Q9NUG6 133 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 GTF2IRD1Q9UHL9 959 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 UBIAD1Q9Y5Z9 338 aa26.62■■□□□ 1.85
CHFR-222ENST00000544093 PFKMP08237 780 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 CYP2C9P11712 490 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 CYFIP1Q7L576 1253 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 TRIM22Q8IYM9 498 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 CAGE1Q8TC20 777 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.61■■□□□ 1.859e-6■■■■■ 27.7
CHFR-222ENST00000544093 ZMYND12Q9H0C1 365 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 C6orf50Q9HD87 102 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 JADE2Q9NQC1 790 aa26.61■■□□□ 1.85
CHFR-222ENST00000544093 ITGB5P18084 799 aa26.6■■□□□ 1.85
CHFR-222ENST00000544093 GNA11P29992 359 aa26.6■■□□□ 1.85
CHFR-222ENST00000544093 RFC2P35250 354 aa26.6■■□□□ 1.85
CHFR-222ENST00000544093 NTRK3Q16288 839 aa26.6■■□□□ 1.85
CHFR-222ENST00000544093 TMEM240Q5SV17 173 aa26.6■■□□□ 1.85
CHFR-222ENST00000544093 FAM109BQ6ICB4 259 aaPredicted RBP26.6■■□□□ 1.85
CHFR-222ENST00000544093 CPLX2Q6PUV4 134 aaKnown RBP26.6■■□□□ 1.85
CHFR-222ENST00000544093 RETREG2Q8NC44 543 aa26.6■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms