RNA–Protein interactions for RNA: ENST00000542337.5

DDB1-220, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-220ENST00000542337 FTOQ9C0B1 505 aaKnown RBP eCLIP23.31■■□□□ 1.32
DDB1-220ENST00000542337 PSTPIP2Q9H939 334 aa23.31■■□□□ 1.32
DDB1-220ENST00000542337 NOP56O00567 594 aaKnown RBP23.3■■□□□ 1.32
DDB1-220ENST00000542337 SORBS3O60504 671 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 IQCF3P0C7M6 154 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 UBA1P22314 1058 aaKnown RBP23.3■■□□□ 1.32
DDB1-220ENST00000542337 NEDD9Q14511 834 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 GDF6Q6KF10 455 aaPredicted RBP23.3■■□□□ 1.32
DDB1-220ENST00000542337 USP17L6PQ6QN14 398 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 DHX32Q7L7V1 743 aaKnown RBP23.3■■□□□ 1.32
DDB1-220ENST00000542337 MICU3Q86XE3 530 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 CMTR1Q8N1G2 835 aaKnown RBP23.3■■□□□ 1.32
DDB1-220ENST00000542337 CCDC82Q8N4S0 544 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 ZFP91Q96JP5 570 aaPredicted RBP23.3■■□□□ 1.32
DDB1-220ENST00000542337 HDAC6Q9UBN7 1215 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 SCN10AQ9Y5Y9 1956 aa23.3■■□□□ 1.32
DDB1-220ENST00000542337 FIBPO43427 364 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 F2P00734 622 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 HMGB1P09429 215 aaKnown RBP23.29■■□□□ 1.32
DDB1-220ENST00000542337 ZNF286BP0CG31 522 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 PBX2P40425 430 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 SP2Q02086 613 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 HSDL1Q3SXM5 330 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 TSGA10IPQ3SY00 556 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 NLRX1Q86UT6 975 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 RAB11FIP4Q86YS3 637 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 MAFAQ8NHW3 353 aaPredicted RBP23.29■■□□□ 1.32
DDB1-220ENST00000542337 AFAP1L1Q8TED9 768 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 RBM28Q9NW13 759 aaKnown RBP23.29■■□□□ 1.32
DDB1-220ENST00000542337 RTEL1Q9NZ71 1219 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 GTF2IRD1Q9UHL9 959 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 BAZ2BQ9UIF8 2168 aaKnown RBP23.29■■□□□ 1.32
DDB1-220ENST00000542337 FRMPD4Q14CM0 1322 aa23.29■■□□□ 1.32
DDB1-220ENST00000542337 PARNO95453 639 aaKnown RBP23.28■■□□□ 1.32
DDB1-220ENST00000542337 HOXD8P13378 290 aaPredicted RBP23.28■■□□□ 1.32
DDB1-220ENST00000542337 ICAM3P32942 547 aa23.28■■□□□ 1.32
DDB1-220ENST00000542337 MRPS9P82933 396 aaKnown RBP23.28■■□□□ 1.32
DDB1-220ENST00000542337 FGD1P98174 961 aa23.28■■□□□ 1.32
DDB1-220ENST00000542337 GRIN2CQ14957 1233 aa23.28■■□□□ 1.32
DDB1-220ENST00000542337 PCNX4Q63HM2 1172 aa23.28■■□□□ 1.32
DDB1-220ENST00000542337 TMTC3Q6ZXV5 915 aa23.28■■□□□ 1.32
DDB1-220ENST00000542337 INPP4AQ96PE3 977 aaPredicted RBP23.28■■□□□ 1.32
DDB1-220ENST00000542337 SLC28A3Q9HAS3 691 aa23.28■■□□□ 1.32
DDB1-220ENST00000542337 SPATA31C2B4DYI2 1134 aa23.27■■□□□ 1.32
DDB1-220ENST00000542337 MEIS2O14770 477 aa23.27■■□□□ 1.32
DDB1-220ENST00000542337 ATP2A2P16615 1042 aaKnown RBP23.27■■□□□ 1.32
DDB1-220ENST00000542337 KIAA1217Q5T5P2 1943 aa23.27■■□□□ 1.32
DDB1-220ENST00000542337 SPDYE3A6NKU9 549 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 HAS3O00219 553 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 ZBTB43O43298 467 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 SELPP16109 830 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 EXOSC10Q01780 885 aaKnown RBP23.26■■□□□ 1.31
DDB1-220ENST00000542337 PTK7Q13308 1070 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 COL9A3Q14050 684 aaPredicted RBP23.26■■□□□ 1.31
DDB1-220ENST00000542337 METTL7BQ6UX53 244 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 HEATR3Q7Z4Q2 680 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 GIMAP8Q8ND71 665 aaPredicted RBP23.26■■□□□ 1.31
DDB1-220ENST00000542337 GPKOWQ92917 476 aaPredicted RBP eCLIP23.26■■□□□ 1.31
DDB1-220ENST00000542337 GAS2L1Q99501 681 aaPredicted RBP23.26■■□□□ 1.31
DDB1-220ENST00000542337 EHMT1Q9H9B1 1298 aa23.26■■□□□ 1.31
DDB1-220ENST00000542337 DLL1O00548 723 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 RTN1Q16799 776 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 APOA5Q6Q788 366 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 LRRC8DQ7L1W4 858 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 CYFIP1Q7L576 1253 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 RASEFQ8IZ41 740 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 CDHR1Q96JP9 859 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 USP26Q9BXU7 913 aa23.25■■□□□ 1.31
DDB1-220ENST00000542337 hCG_1642624A0A1W2PR95 340 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 H3BRB1 525 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.24■■□□□ 1.31
DDB1-220ENST00000542337 PHOSPHO2Q8TCD6 241 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 VWCEQ96DN2 955 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 SENP7Q9BQF6 1050 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 C16orf70Q9BSU1 422 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 NKX2-4Q9H2Z4 354 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 TUT1Q9H6E5 874 aaKnown RBP23.24■■□□□ 1.31
DDB1-220ENST00000542337 NAP1L2Q9ULW6 460 aaPredicted RBP23.24■■□□□ 1.31
DDB1-220ENST00000542337 PCDHA11Q9Y5I1 949 aa23.24■■□□□ 1.31
DDB1-220ENST00000542337 KIF28PB7ZC32 967 aa23.23■■□□□ 1.31
DDB1-220ENST00000542337 BAIAP3O94812 1187 aa23.23■■□□□ 1.31
DDB1-220ENST00000542337 NEFLP07196 543 aa23.23■■□□□ 1.31
DDB1-220ENST00000542337 CKBP12277 381 aa23.23■■□□□ 1.31
DDB1-220ENST00000542337 RABGGTBP53611 331 aa23.23■■□□□ 1.31
DDB1-220ENST00000542337 TCEANC2Q96MN5 208 aa23.23■■□□□ 1.31
DDB1-220ENST00000542337 SLC9A7Q96T83 725 aa23.23■■□□□ 1.31
DDB1-220ENST00000542337 C17orf102A2RUQ5 167 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 GOLGA8AA7E2F4 631 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 GOLGA8BA8MQT2 603 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 LGALS2P05162 132 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 GNAT1P11488 350 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 KCNJ6P48051 423 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 RBL2Q08999 1139 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 ADCK5Q3MIX3 580 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 TEX2Q8IWB9 1127 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 GPRASP2Q96D09 838 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 CTAGE1Q96RT6 745 aa23.22■■□□□ 1.31
DDB1-220ENST00000542337 ZNF215Q9UL58 517 aaPredicted RBP23.22■■□□□ 1.31
DDB1-220ENST00000542337 KLF18A0A0U1RQI7 1052 aa23.21■■□□□ 1.31
DDB1-220ENST00000542337 CCDC196A0A1B0GTZ2 297 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms