RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 BAZ2AQ9UIF9 1905 aaKnown RBP12.22□□□□□ -0.45
CDH3-203ENST00000542274 MYH15Q9Y2K3 1946 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 GOLGA6L9A6NEM1 432 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 NEMFO60524 1076 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 HOXD12P35452 270 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 GRIK5Q16478 980 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 TBC1D10BQ4KMP7 808 aaPredicted RBP12.22□□□□□ -0.45
CDH3-203ENST00000542274 NUGGCQ68CJ6 796 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 KRT40Q6A162 431 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 PALB2Q86YC2 1186 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 CCDC50Q8IVM0 306 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.22□□□□□ -0.45
CDH3-203ENST00000542274 SREK1Q8WXA9 508 aaKnown RBP12.22□□□□□ -0.45
CDH3-203ENST00000542274 HVCN1Q96D96 273 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 BRIP1Q9BX63 1249 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 CBX8Q9HC52 389 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 DDX19AQ9NUU7 478 aaKnown RBP12.22□□□□□ -0.45
CDH3-203ENST00000542274 PCMTD2Q9NV79 361 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 COMMD8Q9NX08 183 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 KCNJ14Q9UNX9 436 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 CCDC69A6NI79 296 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 PPEF1O14829 653 aaPredicted RBP12.22□□□□□ -0.45
CDH3-203ENST00000542274 KIAA0754O94854 1291 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 SRGNP10124 158 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 CYP2D6P10635 497 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 GNAQP50148 359 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 COBLL1Q53SF7 1204 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 CCAR2Q8N163 923 aaKnown RBP12.22□□□□□ -0.45
CDH3-203ENST00000542274 LINC00301Q8NCQ3 95 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 FAM71BQ8TC56 605 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 NSMCE1Q8WV22 266 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 TMEM87BQ96K49 555 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 NACAP1Q9BZK3 213 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 QPCTLQ9NXS2 382 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 POLLQ9UGP5 575 aa12.22□□□□□ -0.45
CDH3-203ENST00000542274 C6orf229H3BNL8 230 aa12.21□□□□□ -0.45
CDH3-203ENST00000542274 RIMBP2O15034 1052 aa12.21□□□□□ -0.45
CDH3-203ENST00000542274 AKR1B10O60218 316 aa12.21□□□□□ -0.45
CDH3-203ENST00000542274 NDUFA8P51970 172 aa12.21□□□□□ -0.45
CDH3-203ENST00000542274 EIF2B5Q13144 721 aaKnown RBP12.21□□□□□ -0.45
CDH3-203ENST00000542274 C11orf57Q6ZUT1 292 aaPredicted RBP12.21□□□□□ -0.45
CDH3-203ENST00000542274 GPR161Q8N6U8 529 aaKnown RBP12.21□□□□□ -0.45
CDH3-203ENST00000542274 NSUN4Q96CB9 384 aaKnown RBP12.21□□□□□ -0.45
CDH3-203ENST00000542274 GABBR1Q9UBS5 961 aa12.21□□□□□ -0.45
CDH3-203ENST00000542274 WDR19Q8NEZ3 1342 aa12.21□□□□□ -0.45
CDH3-203ENST00000542274 CHD4Q14839 1912 aa12.21□□□□□ -0.45
CDH3-203ENST00000542274 NMT2O60551 498 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 CHRNA5P30532 468 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 IARSP41252 1262 aaKnown RBP12.21□□□□□ -0.46
CDH3-203ENST00000542274 KIF11P52732 1056 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 PHEXP78562 749 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 STK38Q15208 465 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 PABPC1LQ4VXU2 614 aaKnown RBP12.21□□□□□ -0.46
CDH3-203ENST00000542274 BRAPQ7Z569 592 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 SGMS1Q86VZ5 419 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 PLPP6Q8IY26 295 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 GBP7Q8N8V2 638 aaPredicted RBP12.21□□□□□ -0.46
CDH3-203ENST00000542274 ENGASEQ8NFI3 743 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 SLC40A1Q9NP59 571 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 KIAA1468Q9P260 1216 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 GGA1Q9UJY5 639 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 LEMD3Q9Y2U8 911 aa12.21□□□□□ -0.46
CDH3-203ENST00000542274 KLRG2A4D1S0 409 aaPredicted RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 CSPG5O95196 566 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 ATP4AP20648 1035 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 ENDOUP21128 410 aaKnown RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 BAG6P46379 1132 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 WTAPQ15007 396 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 FKBP15Q5T1M5 1219 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 RBM43Q6ZSC3 357 aaKnown RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 FAM200AQ8TCP9 573 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 CRAMP1Q96RY5 1269 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 SYNCQ9H7C4 482 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 ANO10Q9NW15 660 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 C6orf203Q9P0P8 240 aaPredicted RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 CCDC88AQ3V6T2 1871 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 ATXN2Q99700 1313 aaKnown RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 LINC00854A0A1B0GVQ3 168 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 HMGB1P1B2RPK0 211 aaPredicted RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 USP17L12C9JPN9 530 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 USP17L21D6R901 530 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 MCM3P25205 808 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 GNL2Q13823 731 aaKnown RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 LCA5Q86VQ0 697 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 TRIM50Q86XT4 487 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 LRRC8AQ8IWT6 810 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 TBC1D16Q8TBP0 767 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 AFAP1L1Q8TED9 768 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 UIMC1Q96RL1 719 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 TCHPQ9BT92 498 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 OCEL1Q9H607 264 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 RHBDL2Q9NX52 303 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 TUBA8Q9NY65 449 aaPredicted RBP12.2□□□□□ -0.46
CDH3-203ENST00000542274 MROH7-TTC4A0A0A0MT08 1334 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 TNKSO95271 1327 aa12.2□□□□□ -0.46
CDH3-203ENST00000542274 SART1O43290 800 aaKnown RBP12.19□□□□□ -0.46
CDH3-203ENST00000542274 LGR5O75473 907 aa12.19□□□□□ -0.46
CDH3-203ENST00000542274 MTRF1O75570 445 aaKnown RBP12.19□□□□□ -0.46
CDH3-203ENST00000542274 SSBP05455 408 aaKnown RBP eCLIP12.19□□□□□ -0.46
CDH3-203ENST00000542274 GNAT2P19087 354 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms