RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 IFIT1BQ5T764 474 aaKnown RBP17.95■□□□□ 0.46
RTN3-211ENST00000542238 SPRED2Q7Z698 418 aa17.95■□□□□ 0.46
RTN3-211ENST00000542238 GDPD5Q8WTR4 605 aa17.95■□□□□ 0.46
RTN3-211ENST00000542238 TGS1Q96RS0 853 aaKnown RBP17.95■□□□□ 0.46
RTN3-211ENST00000542238 DSCC1Q9BVC3 393 aa17.95■□□□□ 0.46
RTN3-211ENST00000542238 OSBPL3Q9H4L5 887 aa17.95■□□□□ 0.46
RTN3-211ENST00000542238 MTUS1Q9ULD2 1270 aa17.95■□□□□ 0.46
RTN3-211ENST00000542238 EMSYQ7Z589 1322 aa17.95■□□□□ 0.46
RTN3-211ENST00000542238 ERVK-21P61565 698 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 ZNF618Q5T7W0 954 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 CHD1LQ86WJ1 897 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 PLEKHM2Q8IWE5 1019 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 SMC5Q8IY18 1101 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 SAMD3Q8N6K7 520 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 SPATA33Q96N06 139 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 PCDHA1Q9Y5I3 950 aa17.94■□□□□ 0.46
RTN3-211ENST00000542238 KLRF2D3W0D1 207 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 LGR5O75473 907 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 GHRHRQ02643 423 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 TRAF1Q13077 416 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 TRIM71Q2Q1W2 868 aaKnown RBP17.93■□□□□ 0.46
RTN3-211ENST00000542238 CELF3Q5SZQ8 465 aaKnown RBP17.93■□□□□ 0.46
RTN3-211ENST00000542238 MYSM1Q5VVJ2 828 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 FAM117BQ6P1L5 589 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 STOX1Q6ZVD7 989 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 PDCD2LQ9BRP1 358 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 SUGCTQ9HAC7 445 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 INSL6Q9Y581 213 aa17.93■□□□□ 0.46
RTN3-211ENST00000542238 LINC01553A4QN01 128 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 OPLAHO14841 1288 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 ZBTB5O15062 677 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 GGPS1O95749 300 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 AMHP03971 560 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 TGFB3P10600 412 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 HOXD8P13378 290 aaPredicted RBP17.92■□□□□ 0.46
RTN3-211ENST00000542238 ZNF200P98182 395 aaPredicted RBP17.92■□□□□ 0.46
RTN3-211ENST00000542238 TCTN1Q2MV58 587 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 VSIG10LQ86VR7 867 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 STAG2Q8N3U4 1231 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 EPHX3Q9H6B9 360 aa17.92■□□□□ 0.46
RTN3-211ENST00000542238 MICAL3Q7RTP6 2002 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 RSPH10B2B2RC85 870 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 SORBS3O60504 671 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 RGS20O76081 388 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 RSPH10BP0C881 870 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 CCND2P30279 289 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 HOXA13P31271 388 aaPredicted RBP17.91■□□□□ 0.46
RTN3-211ENST00000542238 THPOP40225 353 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 PGM5Q15124 567 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 HSDL1Q3SXM5 330 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 TRAF7Q6Q0C0 670 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 WNT8BQ93098 351 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 MLXIPQ9HAP2 919 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 HCN4Q9Y3Q4 1203 aa17.91■□□□□ 0.46
RTN3-211ENST00000542238 GCOM1H8Y6P7 765 aaPredicted RBP17.9■□□□□ 0.46
RTN3-211ENST00000542238 POLR2MP0CAP2 368 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 NUCB1Q02818 461 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 MBTPS1Q14703 1052 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 TMEM31Q5JXX7 168 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 SERINC5Q86VE9 423 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 FBXO22Q8NEZ5 403 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 MTMR8Q96EF0 704 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 LRFN3Q9BTN0 628 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 MAD2L2Q9UI95 211 aa17.9■□□□□ 0.46
RTN3-211ENST00000542238 BAZ2BQ9UIF8 2168 aaKnown RBP17.9■□□□□ 0.46
RTN3-211ENST00000542238 C17orf102A2RUQ5 167 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 H3BRB1 525 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 PPP1R11O60927 126 aaPredicted RBP17.89■□□□□ 0.45
RTN3-211ENST00000542238 UBA1P22314 1058 aaKnown RBP17.89■□□□□ 0.45
RTN3-211ENST00000542238 SP2Q02086 613 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 TRDNQ13061 729 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.89■□□□□ 0.451e-6■■■■■ 27.3
RTN3-211ENST00000542238 HOMER1Q86YM7 354 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 MYOCDQ8IZQ8 938 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 DBF4BQ8NFT6 615 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 ATP6V0A1Q93050 837 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 C16orf70Q9BSU1 422 aa17.89■□□□□ 0.45
RTN3-211ENST00000542238 TUT1Q9H6E5 874 aaKnown RBP17.89■□□□□ 0.45
RTN3-211ENST00000542238 UBE2ZQ9H832 354 aaPredicted RBP17.89■□□□□ 0.45
RTN3-211ENST00000542238 PALM3A6NDB9 673 aaPredicted RBP17.88■□□□□ 0.45
RTN3-211ENST00000542238 NOP56O00567 594 aaKnown RBP17.88■□□□□ 0.45
RTN3-211ENST00000542238 SEC23AQ15436 765 aa17.88■□□□□ 0.45
RTN3-211ENST00000542238 GNPTABQ3T906 1256 aa17.88■□□□□ 0.45
RTN3-211ENST00000542238 FCHSD1Q86WN1 690 aa17.88■□□□□ 0.45
RTN3-211ENST00000542238 IL31RAQ8NI17 732 aa17.88■□□□□ 0.45
RTN3-211ENST00000542238 ARIH1Q9Y4X5 557 aaPredicted RBP17.88■□□□□ 0.45
RTN3-211ENST00000542238 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.87■□□□□ 0.45
RTN3-211ENST00000542238 HIC1Q14526 733 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 PTPROQ16827 1216 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 PLEKHG4Q58EX7 1191 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 SEPT8Q92599 483 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 SAMD11Q96NU1 681 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 PIGSQ96S52 555 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 C17orf80Q9BSJ5 609 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 USP26Q9BXU7 913 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 KAT6AQ92794 2004 aa17.87■□□□□ 0.45
RTN3-211ENST00000542238 ERICH2A1L162 156 aa17.86■□□□□ 0.45
RTN3-211ENST00000542238 GPR37L1O60883 481 aa17.86■□□□□ 0.45
RTN3-211ENST00000542238 CAND2O75155 1236 aa17.86■□□□□ 0.45
RTN3-211ENST00000542238 LGALS2P05162 132 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 231.5 ms