RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GTPBP6O43824 516 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 MYCLP12524 364 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 HOXD8P13378 290 aaPredicted RBP18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 CASTP20810 708 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 KCNJ6P48051 423 aa18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 ZNF618Q5T7W0 954 aa18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 FAM117BQ6P1L5 589 aa18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 CNKSR3Q6P9H4 555 aa18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 MCF2L2Q86YR7 1114 aa18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 KHSRPQ92945 711 aaKnown RBP eCLIP18.02■□□□□ 0.48
CLSTN3-213ENST00000541953 EIF3JO75822 258 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 GSPT1P15170 499 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 UBA1P22314 1058 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 PDE4AP27815 886 aa18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 IMMTQ16891 758 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 IFIT1BQ5T764 474 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 MYSM1Q5VVJ2 828 aa18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 CCDC155Q8N6L0 562 aa18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 C7orf31Q8N865 590 aa18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 IL27Q8NEV9 243 aa18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 PPTC7Q8NI37 304 aa18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 AMNQ9BXJ7 453 aa18.01■□□□□ 0.47
CLSTN3-213ENST00000541953 PALM3A6NDB9 673 aaPredicted RBP18■□□□□ 0.47
CLSTN3-213ENST00000541953 KLRF2D3W0D1 207 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 CYTH3O43739 400 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 GJB5O95377 273 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 GGPS1O95749 300 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 MKRN4PQ13434 485 aaPredicted RBP18■□□□□ 0.47
CLSTN3-213ENST00000541953 PGM5Q15124 567 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 CCDC178Q5BJE1 867 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 STOX1Q6ZVD7 989 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 HOMER1Q86YM7 354 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 DHX37Q8IY37 1157 aaKnown RBP18■□□□□ 0.47
CLSTN3-213ENST00000541953 PIGSQ96S52 555 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 UBAC1Q9BSL1 405 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 C16orf70Q9BSU1 422 aa18■□□□□ 0.47
CLSTN3-213ENST00000541953 TSPYL2Q9H2G4 693 aaPredicted RBP18■□□□□ 0.47
CLSTN3-213ENST00000541953 RWDD1Q9H446 243 aaPredicted RBP18■□□□□ 0.47
CLSTN3-213ENST00000541953 LINC01553A4QN01 128 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 KIF28PB7ZC32 967 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 ZBTB5O15062 677 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 PTK7Q13308 1070 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 LAMC2Q13753 1193 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 CELF3Q5SZQ8 465 aaKnown RBP17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 KRT23Q9C075 422 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 MAF1Q9H063 256 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 EPHX3Q9H6B9 360 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 SUGCTQ9HAC7 445 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 PCDHA1Q9Y5I3 950 aa17.99■□□□□ 0.47
CLSTN3-213ENST00000541953 C5orf42Q9H799 3197 aa17.98■□□□□ 0.47
CLSTN3-213ENST00000541953 PTH1RQ03431 593 aa17.98■□□□□ 0.47
CLSTN3-213ENST00000541953 VSIG10LQ86VR7 867 aa17.98■□□□□ 0.47
CLSTN3-213ENST00000541953 SPATA33Q96N06 139 aa17.98■□□□□ 0.47
CLSTN3-213ENST00000541953 CD320Q9NPF0 282 aa17.98■□□□□ 0.47
CLSTN3-213ENST00000541953 ATG2AQ2TAZ0 1938 aa17.98■□□□□ 0.47
CLSTN3-213ENST00000541953 CYP21A2P08686 494 aa17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 MRPS9P82933 396 aaKnown RBP17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 SEMA3FQ13275 785 aa17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 COL9A3Q14050 684 aaPredicted RBP17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 GRM4Q14833 912 aa17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 FCHSD1Q86WN1 690 aa17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 C17orf80Q9BSJ5 609 aa17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 ZBED2Q9BTP6 218 aa17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 KATNAL1Q9BW62 490 aa17.97■□□□□ 0.47
CLSTN3-213ENST00000541953 ABHD14A-ACY1A0A1B0GW23 586 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 HOXC8P31273 242 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 NT5C2P49902 561 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 ERVK-21P61565 698 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 SERINC5Q86VE9 423 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 TRIM50Q86XT4 487 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 DBF4BQ8NFT6 615 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 HLA-CQ95604 372 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 YTHDC1Q96MU7 727 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 RAD9AQ99638 391 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 RIOX1Q9H6W3 641 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 CNNM2Q9H8M5 875 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 CTNNA3Q9UI47 895 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 COG5Q9UP83 839 aa17.96■□□□□ 0.47
CLSTN3-213ENST00000541953 HIP1O00291 1037 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 TREHO43280 583 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 LGR5O75473 907 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 LGALS2P05162 132 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 THPOP40225 353 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 ANTXR2P58335 489 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 AAK1Q2M2I8 961 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 PIBF1Q8WXW3 757 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 C11orf16Q9NQ32 467 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 SUPT16HQ9Y5B9 1047 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 FRMPD4Q14CM0 1322 aa17.95■□□□□ 0.46
CLSTN3-213ENST00000541953 PPFIA4O75335 1185 aa17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 CTSHP09668 335 aa17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 SMIM10L2AP0DMW4 78 aa17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 SMIM10L2BP0DMW5 78 aa17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 TROAPQ12815 778 aa17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 IKBKEQ14164 716 aa17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 TGS1Q96RS0 853 aaKnown RBP17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 NLRC5Q86WI3 1866 aa17.94■□□□□ 0.46
CLSTN3-213ENST00000541953 GCOM1H8Y6P7 765 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-213ENST00000541953 PARNO95453 639 aaKnown RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms