RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 IGSF5Q9NSI5 407 aa6.24□□□□□ -1.41
PRKDC-210ENST00000541488 PPARGC1AQ9UBK2 798 aaKnown RBP6.24□□□□□ -1.41
PRKDC-210ENST00000541488 PRODHO43272 600 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 MSCO60682 206 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 DLX2Q07687 328 aaPredicted RBP6.23□□□□□ -1.41
PRKDC-210ENST00000541488 LSAMPQ13449 338 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 ZFYVE27Q5T4F4 411 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 ACBD5Q5T8D3 534 aaPredicted RBP6.23□□□□□ -1.41
PRKDC-210ENST00000541488 MROH9Q5TGP6 573 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 KCTD13Q8WZ19 329 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 CCDC140Q96MF4 163 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 GMLQ99445 158 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 YIPF4Q9BSR8 244 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 JAM3Q9BX67 310 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 USP40Q9NVE5 1235 aa6.23□□□□□ -1.41
PRKDC-210ENST00000541488 SPATA6Q9NWH7 488 aaPredicted RBP6.23□□□□□ -1.41
PRKDC-210ENST00000541488 SMARCA5O60264 1052 aaPredicted RBP6.22□□□□□ -1.41
PRKDC-210ENST00000541488 DLX3O60479 287 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 STK10O94804 968 aaKnown RBP6.22□□□□□ -1.41
PRKDC-210ENST00000541488 GTF2A2P52657 109 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 SLC35F1Q5T1Q4 408 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 YOD1Q5VVQ6 348 aaPredicted RBP6.22□□□□□ -1.41
PRKDC-210ENST00000541488 FERMT3Q86UX7 667 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 CARFQ8N187 725 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 ARRDC4Q8NCT1 418 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 CPA5Q8WXQ8 436 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 DDX1Q92499 740 aaKnown RBP6.22□□□□□ -1.41
PRKDC-210ENST00000541488 ZSWIM3Q96MP5 696 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 MRIQ9BWK5 157 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 EPN3Q9H201 632 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 X6R8D5 127 aa6.22□□□□□ -1.41
PRKDC-210ENST00000541488 SLPIP03973 132 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 RAB33AQ14088 237 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 HSP90AA2PQ14568 343 aaPredicted RBP6.21□□□□□ -1.42
PRKDC-210ENST00000541488 CRB2Q5IJ48 1285 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 UBXN11Q5T124 520 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 STEAP3Q658P3 488 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 KCNT2Q6UVM3 1135 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 AARSD1Q9BTE6 412 aaKnown RBP6.21□□□□□ -1.42
PRKDC-210ENST00000541488 PHF20Q9BVI0 1012 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 SLITRK6Q9H5Y7 841 aa6.21□□□□□ -1.42
PRKDC-210ENST00000541488 CAPNS1P04632 268 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 SLC6A11P48066 632 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 SARSP49591 514 aaKnown RBP6.2□□□□□ -1.42
PRKDC-210ENST00000541488 ZC3H6P61129 1189 aaKnown RBP6.2□□□□□ -1.42
PRKDC-210ENST00000541488 MAP4K2Q12851 820 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 TTLL7Q6ZT98 887 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 SPATC1Q76KD6 591 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 MIB1Q86YT6 1006 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 RIOX2Q8IUF8 465 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 RBM12BQ8IXT5 1001 aaKnown RBP6.2□□□□□ -1.42
PRKDC-210ENST00000541488 C11orf84Q9BUA3 381 aaPredicted RBP6.2□□□□□ -1.42
PRKDC-210ENST00000541488 TANGO6Q9C0B7 1094 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 ARHGEF4Q9NR80 690 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 PFDN2Q9UHV9 154 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 PCDHB4Q9Y5E5 795 aa6.2□□□□□ -1.42
PRKDC-210ENST00000541488 SH3D21A4FU49 640 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 H7BY64 318 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 HGSO14964 777 aaPredicted RBP6.19□□□□□ -1.42
PRKDC-210ENST00000541488 DGKIO75912 1065 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 ZC3H18Q86VM9 953 aaKnown RBP6.19□□□□□ -1.42
PRKDC-210ENST00000541488 FAM126BQ8IXS8 530 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 CKAP2LQ8IYA6 745 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 Q8N1Y9 231 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 KCNJ15Q99712 375 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 NTMQ9P121 344 aa6.19□□□□□ -1.42
PRKDC-210ENST00000541488 TCRBV5S2A0A599 114 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 SLC27A2O14975 620 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 U2SURPO15042 1029 aaKnown RBP6.18□□□□□ -1.42
PRKDC-210ENST00000541488 PABPC1P11940 636 aaKnown RBP6.18□□□□□ -1.42
PRKDC-210ENST00000541488 COL6A2P12110 1019 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 C6P13671 934 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 GTF2F1P35269 517 aaKnown RBP eCLIP6.18□□□□□ -1.42
PRKDC-210ENST00000541488 ITGA1P56199 1179 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 CAP1Q01518 475 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 GRIN1Q05586 938 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 NTRK3Q16288 839 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 CR1LQ2VPA4 569 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 MCTP2Q6DN12 878 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 NSMFQ6X4W1 530 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 PIP4K2CQ8TBX8 421 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.18□□□□□ -1.42
PRKDC-210ENST00000541488 EPB41L1Q9H4G0 881 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 SMPD4Q9NXE4 827 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 MYOTQ9UBF9 498 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 RBPJLQ9UBG7 517 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 NPFFR2Q9Y5X5 522 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 DUSP10Q9Y6W6 482 aa6.18□□□□□ -1.42
PRKDC-210ENST00000541488 IQCA1LA6NCM1 817 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 DDX3XO00571 662 aaKnown RBP eCLIP6.17□□□□□ -1.42
PRKDC-210ENST00000541488 CNR2P34972 360 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 THBS2P35442 1172 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 GJA9P57773 515 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 NKX3-2P78367 333 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 TESK1Q15569 626 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 PHF19Q5T6S3 580 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 TMC5Q6UXY8 1006 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 ZNF761Q86XN6 746 aaPredicted RBP6.17□□□□□ -1.42
PRKDC-210ENST00000541488 LINC00482Q8N8I6 264 aa6.17□□□□□ -1.42
PRKDC-210ENST00000541488 KYQ8NBH2 561 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms