RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	ACSL3	O95573	720 aa		9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	GNA14	O95837	355 aa		9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	YWHAG	P61981	247 aa	Known RBP eCLIP	9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	UBE2Q1	Q7Z7E8	422 aa		9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	PATL1	Q86TB9	770 aa	Known RBP	9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	RUBCN	Q92622	972 aa		9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	PAG1	Q9NWQ8	432 aa		9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	PCDHA5	Q9Y5H7	936 aa		9.46	□□□□□ -0.9
YBX3-208	ENST00000540447	RALGAPB	Q86X10	1494 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	GSPT1	P15170	499 aa	Known RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	SCTR	P47872	440 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	ARFIP2	P53365	341 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	KRT76	Q01546	638 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	LRRC14	Q15048	493 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	DDI1	Q8WTU0	396 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PALD1	Q9ULE6	856 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	SOS1	Q07889	1333 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	ERCC6	Q03468	1493 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	ANO9	A1A5B4	782 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	BACH1	O14867	736 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	DLGAP3	O95886	979 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	ATP6V1B1	P15313	513 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	NQO1	P15559	274 aa	Known RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	GRK2	P25098	689 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	SEC24C	P53992	1094 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	CUL4A	Q13619	759 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	KRT31	Q15323	416 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	THEMIS2	Q5TEJ8	643 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PRMT1	Q99873	361 aa	Known RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	EURL	Q9NYK6	297 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	DBF4	Q9UBU7	674 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	C15orf41	Q9Y2V0	281 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PCDHA13	Q9Y5I0	950 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	RNF113A	O15541	343 aa	Known RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	MARK3	P27448	753 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	DSG1	Q02413	1049 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PRAM1	Q96QH2	718 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PI4KAP2	A4QPH2	592 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PCP4L1	A6NKN8	68 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	MFAP3L	O75121	409 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PLS3	P13797	630 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	H2AFX	P16104	143 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	GARS	P41250	739 aa	Known RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	CASP2	P42575	452 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	CACNA2D1	P54289	1103 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	CABP4	P57796	275 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	CEP78	Q5JTW2	689 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	HDDC2	Q7Z4H3	204 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	CDR2L	Q86X02	465 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PI4KAP1	Q8N8J0	262 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	RAB20	Q9NX57	234 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	PRELID1	Q9Y255	219 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	C2CD2	Q9Y426	696 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	GMEB1	Q9Y692	573 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	FAM170A	A1A519	330 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	TCP11X1	B4DZS4	312 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	XPO1	O14980	1071 aa	Known RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	ATP4A	P20648	1035 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	CAVIN4	Q5BKX8	364 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	WDR44	Q5JSH3	913 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	DPH6	Q7L8W6	267 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	WDR24	Q96S15	920 aa		9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	RPAP3	Q9H6T3	665 aa	Predicted RBP	9.45	□□□□□ -0.9
YBX3-208	ENST00000540447	ARAP1	Q96P48	1450 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	RASA4B	C9J798	803 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	CCDC188	H7C350	402 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	RASA4	O43374	803 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	GSTA1	P08263	222 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	HSPA6	P17066	643 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	HIC1	Q14526	733 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	AKNAD1	Q5T1N1	836 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	DCUN1D2	Q6PH85	259 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	PIK3AP1	Q6ZUJ8	805 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	APOBEC2	Q9Y235	224 aa	Known RBP	9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	NAIP	Q13075	1403 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	TBKBP1	A7MCY6	615 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447		B4DLN1	442 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	SEC24D	O94855	1032 aa	Predicted RBP	9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	PRR29	P0C7W0	189 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	ATP1A3	P13637	1013 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	S100A5	P33763	92 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	CFTR	P13569	1480 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	COPS2	P61201	443 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	GABPA	Q06546	454 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	PLS1	Q14651	629 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	ADCK5	Q3MIX3	580 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	TMEM191C	A6NGB0	347 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	WDR47	O94967	919 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	TMEM191B	P0C7N4	346 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	RBM5	P52756	815 aa	Known RBP eCLIP	9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	PMS2	P54278	862 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	MTTP	P55157	894 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	CCDC85B	Q15834	202 aa	Predicted RBP	9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	FSCB	Q5H9T9	825 aa		9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	HNRNPLL	Q8WVV9	542 aa	Known RBP	9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	MRPL40	Q9NQ50	206 aa	Known RBP	9.44	□□□□□ -0.9
YBX3-208	ENST00000540447	TAF4	O00268	1085 aa		9.44	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms