RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 PLEKHO1Q53GL0 409 aaPredicted RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 TTC39AQ5SRH9 613 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 ZMYM1Q5SVZ6 1142 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 AP1ARQ63HQ0 302 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 LRIG3Q6UXM1 1119 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 SLCO4C1Q6ZQN7 724 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 C1orf229Q6ZS94 237 aaPredicted RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 CCDC121Q6ZUS5 278 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 KCTD17Q8N5Z5 321 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 ZNF280CQ8ND82 737 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 CCDC47Q96A33 483 aaKnown RBP7.45□□□□□ -1.22
USP28-207ENST00000538475 TCEANC2Q96MN5 208 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 CLIC6Q96NY7 704 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 MAP3K14Q99558 947 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 DESI2Q9BSY9 194 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 NUP58Q9BVL2 599 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 FTOQ9C0B1 505 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP28-207ENST00000538475 ZSWIM4Q9H7M6 989 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 SUGCTQ9HAC7 445 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 BRD7Q9NPI1 651 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 CNTNAP5Q8WYK1 1306 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 HEG1Q9ULI3 1381 aa7.45□□□□□ -1.22
USP28-207ENST00000538475 MYH4Q9Y623 1939 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 C5orf60A6NFR6 353 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 CFAP73A6NFT4 308 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 SHISA8B8ZZ34 492 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 SH2B2O14492 632 aaPredicted RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 MGRN1O60291 552 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 LUC7L3O95232 432 aaKnown RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 NDUFA10O95299 355 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 IPO7O95373 1038 aaKnown RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 GDF11O95390 407 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 HOXA7P31268 230 aaPredicted RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 LSP1P33241 339 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 VAV2P52735 878 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 PCBP4P57723 403 aaKnown RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 RASSF7Q02833 373 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 SFSWAPQ12872 951 aaKnown RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 PNOCQ13519 176 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 TRIM29Q14134 588 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 PTGISQ16647 500 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 RTN1Q16799 776 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 RILPL1Q5EBL4 403 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 NAA35Q5VZE5 725 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 ARHGAP27Q6ZUM4 889 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 STOX1Q6ZVD7 989 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 CCDC13Q8IYE1 715 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 TMEM151AQ8N4L1 468 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 IL17REQ8NFR9 667 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 OR8K1Q8NGG5 319 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 DDX54Q8TDD1 881 aaKnown RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 ITFG2Q969R8 447 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 MTA3Q9BTC8 594 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 BOLA2Q9H3K6 86 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 PHAXQ9H814 394 aaKnown RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 SLC40A1Q9NP59 571 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 AVENQ9NQS1 362 aaPredicted RBP7.44□□□□□ -1.22
USP28-207ENST00000538475 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.44□□□□□ -1.22
USP28-207ENST00000538475 ABHD10Q9NUJ1 306 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 MIS18AQ9NYP9 233 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 HCN2Q9UL51 889 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 MROH7-TTC4A0A0A0MT08 1334 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 CPDO75976 1380 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 NID2Q14112 1375 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 MST1RQ04912 1400 aa7.44□□□□□ -1.22
USP28-207ENST00000538475 FER1L4A9Z1Z3 1794 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 ARHGAP23Q9P227 1491 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 A0A087WWV3 80 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 GOLGA6L10A0A0M3HER8 536 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 PATL2C9JE40 543 aaKnown RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 FOXO3O43524 673 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 NEBLO76041 1014 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 PAEPP09466 180 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 EPXP11678 715 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 WEE1P30291 646 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 MDH1P40925 334 aaKnown RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 RCAN1P53805 252 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 CLNS1AP54105 237 aaKnown RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 BIRC3Q13489 604 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 CUL4BQ13620 913 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 ELOAQ14241 798 aaKnown RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 LONRF3Q496Y0 759 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 SPDYCQ5MJ68 293 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 ZNF468Q5VIY5 522 aaPredicted RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 NLRP14Q86W24 1093 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 NBPF5PQ86XG9 351 aaPredicted RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 FOXP4Q8IVH2 680 aaPredicted RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 IFT20Q8IY31 132 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 FUKQ8N0W3 1084 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 IQCKQ8N0W5 287 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 TRIM58Q8NG06 486 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 CFAP61Q8NHU2 1237 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 ZNF473Q8WTR7 871 aaKnown RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 NOC3LQ8WTT2 800 aaKnown RBP7.43□□□□□ -1.22
USP28-207ENST00000538475 PBXIP1Q96AQ6 731 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 SAAL1Q96ER3 474 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 CCDC114Q96M63 670 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 OSBPL9Q96SU4 736 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 DNAJC7Q99615 494 aa7.43□□□□□ -1.22
USP28-207ENST00000538475 SWAP70Q9UH65 585 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms