RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 CEP55Q53EZ4 464 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 TRAF7Q6Q0C0 670 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 RAB20Q9NX57 234 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 NSFL1CQ9UNZ2 370 aaKnown RBP6.12□□□□□ -1.43
CSMD1-215ENST00000537824 PI4KAP42356 2102 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 EPRSP07814 1512 aaKnown RBP6.12□□□□□ -1.43
CSMD1-215ENST00000537824 ATG2BQ96BY7 2078 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 MFAP3LO75121 409 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 GCNT3O95395 438 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 EPHB1P54762 984 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 VSNL1P62760 191 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 NOSTRINQ8IVI9 506 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 OMA1Q96E52 524 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 NDEL1Q9GZM8 345 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 SEPT3Q9UH03 358 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 CLIC4Q9Y696 253 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 AP1G2O75843 785 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 HSPA8P11142 646 aaKnown RBP6.12□□□□□ -1.43
CSMD1-215ENST00000537824 PGM1P36871 562 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 KCNF1Q9H3M0 494 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 LRRIQ3A6PVS8 624 aaPredicted RBP6.12□□□□□ -1.43
CSMD1-215ENST00000537824 CPP00450 1065 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 EIF2B2P49770 351 aaKnown RBP6.12□□□□□ -1.43
CSMD1-215ENST00000537824 DR1Q01658 176 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 GRAMD1CQ8IYS0 662 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 RETREG2Q8NC44 543 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.12□□□□□ -1.43
CSMD1-215ENST00000537824 ARHGAP26Q9UNA1 814 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 TTLL3Q9Y4R7 772 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 FAM135BQ49AJ0 1406 aa6.12□□□□□ -1.43
CSMD1-215ENST00000537824 CHD2O14647 1828 aaKnown RBP6.12□□□□□ -1.43
CSMD1-215ENST00000537824 KRT4P19013 534 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 CCND1P24385 295 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 POLR2FP61218 127 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SNX29Q8TEQ0 813 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ATP6V0A1Q93050 837 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ATP6V0A4Q9HBG4 840 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 THOC2Q8NI27 1593 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SLC4A1P02730 911 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 HLA-DOAP06340 250 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 TMTC4Q5T4D3 741 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 FAM186BQ8IYM0 893 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 CATSPER2Q96P56 530 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 OSBPL5Q9H0X9 879 aaPredicted RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 HLA-DPA1P20036 260 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 STAT1P42224 750 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 TXKP42681 527 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 MDM2Q00987 491 aaPredicted RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 LDHAL6AQ6ZMR3 332 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SRRM1Q8IYB3 904 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SIRT1Q96EB6 747 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 CNGB3Q9NQW8 809 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 PRDM4Q9UKN5 801 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SNX5Q9Y5X3 404 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 DEXIO95424 95 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 IL15P40933 162 aaPredicted RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 USP14P54578 494 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 TTBK2Q6IQ55 1244 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 CADPS2Q86UW7 1296 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 GABPB2Q8TAK5 448 aaPredicted RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 VPS54Q9P1Q0 977 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ZFATQ9P243 1243 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 UGGT2Q9NYU1 1516 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 WNK2Q9Y3S1 2297 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 HAUS5O94927 633 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ECEL1O95672 775 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 MRPS35P82673 323 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 PLA2G4DQ86XP0 818 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 TRIM15Q9C019 465 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 KLC2Q9H0B6 622 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 NOD2Q9HC29 1040 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 PPP1R1BQ9UD71 204 aaPredicted RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 TARSL2A2RTX5 802 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 H7C0C1 242 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SGK1O00141 431 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ATP5OP48047 213 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SGO2Q562F6 1265 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ATG16L1Q676U5 607 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 DYMQ7RTS9 669 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ZNF473Q8WTR7 871 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 CAPN1P07384 714 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 GARSP41250 739 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ECE1P42892 770 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 UBE3AQ05086 875 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 RARS2Q5T160 578 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 EPM2AIP1Q7L775 607 aaPredicted RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 JDP2Q8WYK2 163 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 CCT7Q99832 543 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 PDP2Q9P2J9 529 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 PCDHA5Q9Y5H7 936 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 SLC12A1Q13621 1099 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 MCF2L2Q86YR7 1114 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 TRIM55Q9BYV6 548 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 ARHGEF35A5YM69 484 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 MAP4P27816 1152 aaKnown RBP6.11□□□□□ -1.43
CSMD1-215ENST00000537824 KRT31Q15323 416 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 KSR2Q6VAB6 950 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 MIGA1Q8NAN2 632 aa6.11□□□□□ -1.43
CSMD1-215ENST00000537824 GPCPD1Q9NPB8 672 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms