RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 AFAP1L1Q8TED9 768 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 ATXN2LQ8WWM7 1075 aaKnown RBP9.81□□□□□ -0.84
USP28-203ENST00000537490 PIBF1Q8WXW3 757 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 WNT8BQ93098 351 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 BCAS3Q9H6U6 928 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 THEGQ9P2T0 379 aa9.81□□□□□ -0.84
USP28-203ENST00000537490 SCN5AQ14524 2016 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 PNMA6FA0A0J9YX94 578 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 ERICH2A1L162 156 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 PPFIA4O75335 1185 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 GGPS1O95749 300 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 UBA1P22314 1058 aaKnown RBP9.8□□□□□ -0.84
USP28-203ENST00000537490 CCND2P30279 289 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 TAP1Q03518 808 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 PTK7Q13308 1070 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 KCNV1Q6PIU1 500 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 TRAF7Q6Q0C0 670 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 SPRED2Q7Z698 418 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 TMCO2Q7Z6W1 182 aaPredicted RBP9.8□□□□□ -0.84
USP28-203ENST00000537490 RALYLQ86SE5 291 aaKnown RBP9.8□□□□□ -0.84
USP28-203ENST00000537490 MB21D2Q8IYB1 491 aaPredicted RBP9.8□□□□□ -0.84
USP28-203ENST00000537490 MICALL1Q8N3F8 863 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 CCDC155Q8N6L0 562 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 MAP4K1Q92918 833 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 SPATA33Q96N06 139 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 ASB2Q96Q27 587 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 C16orf70Q9BSU1 422 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 KATNAL1Q9BW62 490 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 A0A0C4DFX4 3053 aa9.8□□□□□ -0.84
USP28-203ENST00000537490 TTC28Q96AY4 2481 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 LAMA2P24043 3122 aaKnown RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 TET1Q8NFU7 2136 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 KIF28PB7ZC32 967 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 BAIAP3O94812 1187 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 CXCL10P02778 98 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 TGFB3P10600 412 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 POU3F3P20264 500 aaPredicted RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 WDR5P61964 334 aaKnown RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 DEFB103AP81534 67 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 MRPS5P82675 430 aaKnown RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 MRPS9P82933 396 aaKnown RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 TRAF1Q13077 416 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 COL9A3Q14050 684 aaPredicted RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 MBTPS1Q14703 1052 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 SART3Q15020 963 aaKnown RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 ZNF618Q5T7W0 954 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 KRT40Q6A162 431 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 CNKSR3Q6P9H4 555 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 CATIPQ7Z7H3 387 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 ARNTL2Q8WYA1 636 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 MYL10Q9BUA6 226 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 MLXIPQ9HAP2 919 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 RTEL1Q9NZ71 1219 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 RBM8AQ9Y5S9 174 aaKnown RBP9.79□□□□□ -0.84
USP28-203ENST00000537490 MTCH2Q9Y6C9 303 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 CDH23Q9H251 3354 aa9.79□□□□□ -0.84
USP28-203ENST00000537490 LCHNA4D1U4 455 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 TNFRSF10AO00220 468 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 TLL1O43897 1013 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 PARNO95453 639 aaKnown RBP9.78□□□□□ -0.84
USP28-203ENST00000537490 ICAM3P32942 547 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 KCNJ6P48051 423 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 SEMA3FQ13275 785 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 ZNF654Q8IZM8 581 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 LY9Q9HBG7 655 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 TELO2Q9Y4R8 837 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 GBF1Q92538 1859 aa9.78□□□□□ -0.84
USP28-203ENST00000537490 BAZ2BQ9UIF8 2168 aaKnown RBP9.77□□□□□ -0.85
USP28-203ENST00000537490 ABHD14A-ACY1A0A1B0GW23 586 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 SPATA31C2B4DYI2 1134 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 H3BRB1 525 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 GTPBP6O43824 516 aaPredicted RBP9.77□□□□□ -0.85
USP28-203ENST00000537490 LPXNO60711 386 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 LGALS2P05162 132 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 TFF2Q03403 129 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 GRB10Q13322 594 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 SKIV2LQ15477 1246 aaKnown RBP9.77□□□□□ -0.85
USP28-203ENST00000537490 USP17L6PQ6QN14 398 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 SERINC5Q86VE9 423 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 DBF4BQ8NFT6 615 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 ADAMTS19Q8TE59 1207 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 INPP4AQ96PE3 977 aaPredicted RBP9.77□□□□□ -0.85
USP28-203ENST00000537490 MAP3K14Q99558 947 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 ZBED2Q9BTP6 218 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 OSBPL7Q9BZF2 842 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 LSG1Q9H089 658 aaKnown RBP9.77□□□□□ -0.85
USP28-203ENST00000537490 RNPEPQ9H4A4 650 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 TUT1Q9H6E5 874 aaKnown RBP9.77□□□□□ -0.85
USP28-203ENST00000537490 FRMPD4Q14CM0 1322 aa9.77□□□□□ -0.85
USP28-203ENST00000537490 KIAA1217Q5T5P2 1943 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 TRIP12Q14669 1992 aaPredicted RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 UNC80Q8N2C7 3258 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 C17orf102A2RUQ5 167 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 RSPH10B2B2RC85 870 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 SH2B2O14492 632 aaPredicted RBP9.76□□□□□ -0.85
USP28-203ENST00000537490 MEIS2O14770 477 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 TREHO43280 583 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 FIBPO43427 364 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 PRC1O43663 620 aa9.76□□□□□ -0.85
USP28-203ENST00000537490 LGR5O75473 907 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms