RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 ZNF286BP0CG31 522 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 ATP2A2P16615 1042 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 UBA1P22314 1058 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 LIFRP42702 1097 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 SMARCC2Q8TAQ2 1214 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 ZFP91Q96JP5 570 aaPredicted RBP18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 GAS2L1Q99501 681 aaPredicted RBP18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 NKX2-4Q9H2Z4 354 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 MLXIPQ9HAP2 919 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 HDAC6Q9UBN7 1215 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 GTF2IRD1Q9UHL9 959 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 SLC12A7Q9Y666 1083 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 EYSQ5T1H1 3165 aa18.68■□□□□ 0.58
CLSTN3-204ENST00000535313 MYO9BQ13459 2157 aa18.67■□□□□ 0.58
CLSTN3-204ENST00000535313 HOXD8P13378 290 aaPredicted RBP18.67■□□□□ 0.58
CLSTN3-204ENST00000535313 SP2Q02086 613 aa18.67■□□□□ 0.58
CLSTN3-204ENST00000535313 KIAA0753Q2KHM9 967 aa18.67■□□□□ 0.58
CLSTN3-204ENST00000535313 AFAP1L1Q8TED9 768 aa18.67■□□□□ 0.58
CLSTN3-204ENST00000535313 PLEKHA8P1O95397 391 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 RXRAP19793 462 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 RABGGTBP53611 331 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 HSDL1Q3SXM5 330 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 SYNE3Q6ZMZ3 975 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 SKAP1Q86WV1 359 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 SRBD1Q8N5C6 995 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 GPKOWQ92917 476 aaPredicted RBP eCLIP18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 LRRC2Q9BYS8 371 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 PRDM12Q9H4Q4 367 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 YBX2Q9Y2T7 364 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 PCDHA11Q9Y5I1 949 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 FRMPD4Q14CM0 1322 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 MYH7BA7E2Y1 1941 aa18.66■□□□□ 0.58
CLSTN3-204ENST00000535313 CHD9Q3L8U1 2897 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 PRUNE2Q8WUY3 3088 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 HAS3O00219 553 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 PIK3CDO00329 1044 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 NOP56O00567 594 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 PARNO95453 639 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 SELPP16109 830 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 MRPS9P82933 396 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 NEDD9Q14511 834 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 XRRA1Q6P2D8 792 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 USP17L6PQ6QN14 398 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 CMTR1Q8N1G2 835 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 FANCBQ8NB91 859 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 INPP4AQ96PE3 977 aaPredicted RBP18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 CTAGE1Q96RT6 745 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 SLC9A7Q96T83 725 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 RTEL1Q9NZ71 1219 aa18.65■□□□□ 0.58
CLSTN3-204ENST00000535313 SCN5AQ14524 2016 aa18.64■□□□□ 0.58
CLSTN3-204ENST00000535313 ICAM3P32942 547 aa18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 PTK7Q13308 1070 aa18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 COL9A3Q14050 684 aaPredicted RBP18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 PPP2R2DQ66LE6 453 aa18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 LRRC8DQ7L1W4 858 aa18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 RAB11FIP4Q86YS3 637 aa18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 PHOSPHO2Q8TCD6 241 aa18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 DHX38Q92620 1227 aaKnown RBP18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 PSTPIP2Q9H939 334 aa18.64■□□□□ 0.57
CLSTN3-204ENST00000535313 TANC1Q9C0D5 1861 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 SPATA31C2B4DYI2 1134 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 MEIS2O14770 477 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 FIBPO43427 364 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 BAIAP3O94812 1187 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 CKBP12277 381 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 MYOGP15173 224 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 RBL2Q08999 1139 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 PCNX4Q63HM2 1172 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 METTL7BQ6UX53 244 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 SGMS1Q86VZ5 419 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 MICU3Q86XE3 530 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 CCDC82Q8N4S0 544 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 NEK1Q96PY6 1258 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 C16orf70Q9BSU1 422 aa18.63■□□□□ 0.57
CLSTN3-204ENST00000535313 TRIP12Q14669 1992 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 H3BRB1 525 aa18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 CDC45O75419 566 aa18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 KCNJ6P48051 423 aa18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 TMTC3Q6ZXV5 915 aa18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 CYFIP1Q7L576 1253 aa18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 NLRX1Q86UT6 975 aa18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 TUT1Q9H6E5 874 aaKnown RBP18.62■□□□□ 0.57
CLSTN3-204ENST00000535313 KIF28PB7ZC32 967 aa18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 LGALS2P05162 132 aa18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 IGFBP4P22692 258 aa18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 ZNF200P98182 395 aaPredicted RBP18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 KRT32Q14532 448 aa18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 DHX32Q7L7V1 743 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 COL25A1Q9BXS0 654 aaPredicted RBP18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 USP26Q9BXU7 913 aa18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 BCAS3Q9H6U6 928 aa18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 RBM28Q9NW13 759 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-204ENST00000535313 GBF1Q92538 1859 aa18.6■□□□□ 0.57
CLSTN3-204ENST00000535313 hCG_1642624A0A1W2PR95 340 aa18.6■□□□□ 0.57
CLSTN3-204ENST00000535313 C17orf102A2RUQ5 167 aa18.6■□□□□ 0.57
CLSTN3-204ENST00000535313 SPDYE3A6NKU9 549 aa18.6■□□□□ 0.57
CLSTN3-204ENST00000535313 SEMA3FQ13275 785 aa18.6■□□□□ 0.57
CLSTN3-204ENST00000535313 TSGA10IPQ3SY00 556 aa18.6■□□□□ 0.57
CLSTN3-204ENST00000535313 CNKSR3Q6P9H4 555 aa18.6■□□□□ 0.57
CLSTN3-204ENST00000535313 HEATR3Q7Z4Q2 680 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms