RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 SCAMP3O14828 347 aaKnown RBP7.53□□□□□ -1.2
SYNE1-232ENST00000535081 MYO1BO43795 1136 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 FZD7O75084 574 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 NASPP49321 788 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-232ENST00000535081 EPHB4P54760 987 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 CHRNA2Q15822 529 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 ZNF585AQ6P3V2 769 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 ARHGEF18Q6ZSZ5 1173 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 CCDC103Q8IW40 242 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 PALM2Q8IXS6 379 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 FAM169BQ8N8A8 192 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 IGDCC4Q8TDY8 1250 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 CPLX3Q8WVH0 158 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 DIO2Q92813 273 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 TOE1Q96GM8 510 aaKnown RBP7.53□□□□□ -1.2
SYNE1-232ENST00000535081 TMEM169Q96HH4 297 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 ZNF747Q9BV97 191 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 LGR4Q9BXB1 951 aa7.53□□□□□ -1.2
SYNE1-232ENST00000535081 COA3Q9Y2R0 106 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-232ENST00000535081 CYP7B1O75881 506 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 RECKO95980 971 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 MLLT6P55198 1093 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-232ENST00000535081 PPP2CBP62714 309 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 PPP2CAP67775 309 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 KCNAB2Q13303 367 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 USP51Q70EK9 711 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 ZCCHC14Q8WYQ9 949 aaKnown RBP7.52□□□□□ -1.21
SYNE1-232ENST00000535081 WRNIP1Q96S55 665 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 DEF6Q9H4E7 631 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 JADE2Q9NQC1 790 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 TMEFF2Q9UIK5 374 aaPredicted RBP7.52□□□□□ -1.21
SYNE1-232ENST00000535081 FBXL7Q9UJT9 491 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 CROTQ9UKG9 612 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 PCDHB4Q9Y5E5 795 aa7.52□□□□□ -1.21
SYNE1-232ENST00000535081 HGSO14964 777 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-232ENST00000535081 MEFVO15553 781 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-232ENST00000535081 GJA8P48165 433 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 SELENOPP49908 381 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 NCAPHQ15003 741 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 TEPPQ6URK8 271 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 METTL16Q86W50 562 aaKnown RBP7.51□□□□□ -1.21
SYNE1-232ENST00000535081 KBTBD2Q8IY47 623 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 ARRDC4Q8NCT1 418 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 BTN2A2Q8WVV5 523 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 TMEM209Q96SK2 561 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 FTSJ1Q9UET6 329 aa7.51□□□□□ -1.21
SYNE1-232ENST00000535081 TCRBV5S2A0A599 114 aa7.5□□□□□ -1.21
SYNE1-232ENST00000535081 STEAP3Q658P3 488 aa7.5□□□□□ -1.21
SYNE1-232ENST00000535081 MENTQ9BUN1 341 aa7.5□□□□□ -1.21
SYNE1-232ENST00000535081 TCAF1Q9Y4C2 921 aa7.5□□□□□ -1.21
SYNE1-232ENST00000535081 PATE3B3GLJ2 98 aa7.49□□□□□ -1.21
SYNE1-232ENST00000535081 ARNTLO00327 626 aa7.49□□□□□ -1.21
SYNE1-232ENST00000535081 ECI1P42126 302 aa7.49□□□□□ -1.21
SYNE1-232ENST00000535081 R3HDM1Q15032 1099 aaKnown RBP7.49□□□□□ -1.21
SYNE1-232ENST00000535081 EMC4Q5J8M3 183 aa7.49□□□□□ -1.21
SYNE1-232ENST00000535081 SLFN13Q68D06 897 aa7.49□□□□□ -1.21
SYNE1-232ENST00000535081 KLHL36Q8N4N3 616 aa7.49□□□□□ -1.21
SYNE1-232ENST00000535081 KRTAP9-8Q9BYQ0 159 aa7.49□□□□□ -1.21
SYNE1-232ENST00000535081 H7BY64 318 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 MUSKO15146 869 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 TBX1O43435 398 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 AMHP03971 560 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 SNRPB2P08579 225 aaKnown RBP7.48□□□□□ -1.21
SYNE1-232ENST00000535081 HOXC12P31275 282 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 ACBD5Q5T8D3 534 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-232ENST00000535081 RCBTB1Q8NDN9 531 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 WWC2-AS2Q96NR7 200 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 PTPN18Q99952 460 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 SLITRK6Q9H5Y7 841 aa7.48□□□□□ -1.21
SYNE1-232ENST00000535081 BARX1Q9HBU1 254 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-232ENST00000535081 B4GALT4O60513 344 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 TADA3O75528 432 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 LRG1P02750 347 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 SCG5P05408 212 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 NFATC3Q12968 1075 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 TESK1Q15569 626 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 TRMT10BQ6PF06 316 aaKnown RBP7.47□□□□□ -1.21
SYNE1-232ENST00000535081 KREMEN2Q8NCW0 462 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 PCED1AQ9H1Q7 454 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 MEGF9Q9H1U4 602 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-232ENST00000535081 PCDHA2Q9Y5H9 948 aa7.47□□□□□ -1.21
SYNE1-232ENST00000535081 LSAMPQ13449 338 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 SPDYAQ5MJ70 313 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 TMC5Q6UXY8 1006 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 ZNF227Q86WZ6 799 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 PPIL6Q8IXY8 311 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 SEC16BQ96JE7 1060 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 CHAMP1Q96JM3 812 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 SEMA4AQ9H3S1 761 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 MYOTQ9UBF9 498 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 STRIP2Q9ULQ0 834 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 WASF3Q9UPY6 502 aa7.46□□□□□ -1.22
SYNE1-232ENST00000535081 ZNF623O75123 536 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 DGKIO75912 1065 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 CPP00450 1065 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 ITGAVP06756 1048 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 VAMP1P23763 118 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 LTBRP36941 435 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 PRSS53Q2L4Q9 553 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms