RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 AFG1LQ8WV93 481 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 GTF3C6Q969F1 213 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 C6orf50Q9HD87 102 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 POLR3EQ9NVU0 708 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 ATP11BQ9Y2G3 1177 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 A0A0U1RQG5 324 aaPredicted RBP14.86□□□□□ -0.03
VPS28-216ENST00000533806 EDIL3O43854 480 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 KPNA6O60684 536 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 MMP3P08254 477 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 FDPSP14324 419 aaKnown RBP14.86□□□□□ -0.03
VPS28-216ENST00000533806 GNA11P29992 359 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 FAAP100Q0VG06 881 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 HSDL1Q3SXM5 330 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 GNPTABQ3T906 1256 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 MCTP2Q6DN12 878 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 CPLX2Q6PUV4 134 aaKnown RBP14.86□□□□□ -0.03
VPS28-216ENST00000533806 DHX37Q8IY37 1157 aaKnown RBP14.86□□□□□ -0.03
VPS28-216ENST00000533806 NECAB1Q8N987 351 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 GPRASP2Q96D09 838 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 PGBD1Q96JS3 809 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 AIFM3Q96NN9 605 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 GDF15Q99988 308 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 SENP7Q9BQF6 1050 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 SEZ6LQ9BYH1 1024 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 ANO3Q9BYT9 981 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 PDLIM7Q9NR12 457 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 VPS54Q9P1Q0 977 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 ZMYND8Q9ULU4 1186 aaPredicted RBP14.86□□□□□ -0.03
VPS28-216ENST00000533806 STK36Q9NRP7 1315 aa14.86□□□□□ -0.03
VPS28-216ENST00000533806 TRIM43BA6NCK2 446 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 M0R2N6 131 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 MAFGO15525 162 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 CDKL5O76039 1030 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 GGPS1O95749 300 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 CD4P01730 458 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 CYP3A4P08684 503 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 KCNA2P16389 499 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 SYN1P17600 705 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 PSMC6P62333 389 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 ITGA7Q13683 1181 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 SH3RF1Q7Z6J0 888 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 FAM126BQ8IXS8 530 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 CCDC148Q8NFR7 591 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 CYP2W1Q8TAV3 490 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 KAT2BQ92831 832 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 TRIM43Q96BQ3 446 aaPredicted RBP14.85□□□□□ -0.03
VPS28-216ENST00000533806 MTG1Q9BT17 334 aaPredicted RBP14.85□□□□□ -0.03
VPS28-216ENST00000533806 JADE2Q9NQC1 790 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 PCDH10Q9P2E7 1040 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 LIMCH1Q9UPQ0 1083 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 KIAA1217Q5T5P2 1943 aa14.85□□□□□ -0.03
VPS28-216ENST00000533806 MEIS1O00470 390 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 KIAA0355O15063 1070 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 DTNBO60941 627 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 ATP9AO75110 1047 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 PPFIA4O75335 1185 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 MYL3P08590 195 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 NEDD9Q14511 834 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 BRDTQ58F21 947 aaPredicted RBP14.84□□□□□ -0.03
VPS28-216ENST00000533806 JAKMIP3Q5VZ66 844 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 METTL7BQ6UX53 244 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 NLRX1Q86UT6 975 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 REXO1Q8N1G1 1221 aaKnown RBP14.84□□□□□ -0.03
VPS28-216ENST00000533806 DAGLBQ8NCG7 672 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 BICD2Q8TD16 824 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 TBC1D32Q96NH3 1257 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 MXRA8Q9BRK3 442 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 EHMT1Q9H9B1 1298 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 TBX21Q9UL17 535 aa14.84□□□□□ -0.03
VPS28-216ENST00000533806 HAS3O00219 553 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 PQBP1O60828 265 aaKnown RBP14.83□□□□□ -0.04
VPS28-216ENST00000533806 CLTBP09497 229 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 ITGB8P26012 769 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 BMP8BP34820 402 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 ARHGAP4P98171 946 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 DGKDQ16760 1214 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 NBPF20Q3BBV1 942 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 CEP55Q53EZ4 464 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 NIPA1Q7RTP0 329 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 NSUN7Q8NE18 718 aaKnown RBP14.83□□□□□ -0.04
VPS28-216ENST00000533806 IL27Q8NEV9 243 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 VTI1AQ96AJ9 217 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 CDHR1Q96JP9 859 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 SPATA33Q96N06 139 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 PHF20Q9BVI0 1012 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 BACH2Q9BYV9 841 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 KCNH7Q9NS40 1196 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 PCDHA4Q9UN74 947 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 COLQQ9Y215 455 aaPredicted RBP14.83□□□□□ -0.04
VPS28-216ENST00000533806 TELO2Q9Y4R8 837 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 MROH7Q68CQ1 1323 aa14.83□□□□□ -0.04
VPS28-216ENST00000533806 IGLV3-22A0A075B6J6 115 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 DCDC2CA8MYV0 355 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 FAM86B1E9PN63 330 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 F2P00734 622 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 FAM86B2P0C5J1 330 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 CIITAP33076 1130 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 MAGEA10P43363 369 aaPredicted RBP14.82□□□□□ -0.04
VPS28-216ENST00000533806 NLRP5P59047 1200 aa14.82□□□□□ -0.04
VPS28-216ENST00000533806 MTMR1Q13613 665 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms