RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 PBX4Q9BYU1 374 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 ZNF576Q9H609 170 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 RTEL1Q9NZ71 1219 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 SLC4A7Q9Y6M7 1214 aa17.8■□□□□ 0.44
CPSF1-211ENST00000533492 IQCF3P0C7M6 154 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 ZNF286BP0CG31 522 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 ACTN1P12814 892 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 FOSL2P15408 326 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 UBA1P22314 1058 aaKnown RBP17.79■□□□□ 0.44
CPSF1-211ENST00000533492 PBX2P40425 430 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 SP2Q02086 613 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 KRT32Q14532 448 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 MFSD10Q14728 455 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 RAB30Q15771 203 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 KIAA0753Q2KHM9 967 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 HSDL1Q3SXM5 330 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 GDF6Q6KF10 455 aaPredicted RBP17.79■□□□□ 0.44
CPSF1-211ENST00000533492 DHX32Q7L7V1 743 aaKnown RBP17.79■□□□□ 0.44
CPSF1-211ENST00000533492 FTOQ9C0B1 505 aaKnown RBP eCLIP17.79■□□□□ 0.44
CPSF1-211ENST00000533492 PSTPIP2Q9H939 334 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 HDAC6Q9UBN7 1215 aa17.79■□□□□ 0.44
CPSF1-211ENST00000533492 PIK3CDO00329 1044 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 MEIS2O14770 477 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 F2P00734 622 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 MRPS9P82933 396 aaKnown RBP17.78■□□□□ 0.44
CPSF1-211ENST00000533492 NEDD9Q14511 834 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 GRIN2CQ14957 1233 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 TMTC3Q6ZXV5 915 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 CAGE1Q8TC20 777 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 GPKOWQ92917 476 aaPredicted RBP eCLIP17.78■□□□□ 0.44
CPSF1-211ENST00000533492 GTF2IRD1Q9UHL9 959 aa17.78■□□□□ 0.44
CPSF1-211ENST00000533492 FRMPD4Q14CM0 1322 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 hCG_1642624A0A1W2PR95 340 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 NOP56O00567 594 aaKnown RBP17.77■□□□□ 0.44
CPSF1-211ENST00000533492 ICAM3P32942 547 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 FGD1P98174 961 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 EXOSC10Q01780 885 aaKnown RBP17.77■□□□□ 0.44
CPSF1-211ENST00000533492 TSGA10IPQ3SY00 556 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 XRRA1Q6P2D8 792 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 RASEFQ8IZ41 740 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 MAFAQ8NHW3 353 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-211ENST00000533492 TCEANC2Q96MN5 208 aa17.77■□□□□ 0.44
CPSF1-211ENST00000533492 INPP4AQ96PE3 977 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-211ENST00000533492 RBM28Q9NW13 759 aaKnown RBP17.77■□□□□ 0.44
CPSF1-211ENST00000533492 TRIP12Q14669 1992 aaPredicted RBP17.77■□□□□ 0.43
CPSF1-211ENST00000533492 SPATA31C2B4DYI2 1134 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 HAS3O00219 553 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 ZBTB43O43298 467 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 FIBPO43427 364 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 HMGB1P09429 215 aaKnown RBP17.76■□□□□ 0.43
CPSF1-211ENST00000533492 HOXD8P13378 290 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-211ENST00000533492 ADCK5Q3MIX3 580 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 PCNX4Q63HM2 1172 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 APOA5Q6Q788 366 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 CYFIP1Q7L576 1253 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 HEATR3Q7Z4Q2 680 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 NLRX1Q86UT6 975 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 AFAP1L1Q8TED9 768 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 VWCEQ96DN2 955 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 SLC28A3Q9HAS3 691 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 MYO9BQ13459 2157 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 SCN5AQ14524 2016 aa17.76■□□□□ 0.43
CPSF1-211ENST00000533492 SPDYE3A6NKU9 549 aa17.75■□□□□ 0.43
CPSF1-211ENST00000533492 ATP2A2P16615 1042 aaKnown RBP17.75■□□□□ 0.43
CPSF1-211ENST00000533492 RTN1Q16799 776 aa17.75■□□□□ 0.43
CPSF1-211ENST00000533492 METTL7BQ6UX53 244 aa17.75■□□□□ 0.43
CPSF1-211ENST00000533492 NKX2-4Q9H2Z4 354 aa17.75■□□□□ 0.43
CPSF1-211ENST00000533492 NAP1L2Q9ULW6 460 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-211ENST00000533492 H3BRB1 525 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 DLL1O00548 723 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 PARNO95453 639 aaKnown RBP17.74■□□□□ 0.43
CPSF1-211ENST00000533492 SELPP16109 830 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 RABGGTBP53611 331 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 PTK7Q13308 1070 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 LRRC8DQ7L1W4 858 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 CTAGE1Q96RT6 745 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 GAS2L1Q99501 681 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-211ENST00000533492 C16orf70Q9BSU1 422 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 USP26Q9BXU7 913 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 TUT1Q9H6E5 874 aaKnown RBP17.74■□□□□ 0.43
CPSF1-211ENST00000533492 BCAS3Q9H6U6 928 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 BRPF3Q9ULD4 1205 aa17.74■□□□□ 0.43
CPSF1-211ENST00000533492 KLF18A0A0U1RQI7 1052 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 GOLGA8AA7E2F4 631 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 GOLGA8BA8MQT2 603 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 LGALS2P05162 132 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 NEFLP07196 543 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 CKBP12277 381 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 SEMA3FQ13275 785 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 UBE2SQ16763 222 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.73■□□□□ 0.43
CPSF1-211ENST00000533492 GIMAP8Q8ND71 665 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-211ENST00000533492 DHX38Q92620 1227 aaKnown RBP17.73■□□□□ 0.43
CPSF1-211ENST00000533492 CDHR1Q96JP9 859 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 SENP7Q9BQF6 1050 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 EHMT1Q9H9B1 1298 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 YBX2Q9Y2T7 364 aaKnown RBP17.73■□□□□ 0.43
CPSF1-211ENST00000533492 PCDHA11Q9Y5I1 949 aa17.73■□□□□ 0.43
CPSF1-211ENST00000533492 C17orf102A2RUQ5 167 aa17.72■□□□□ 0.43
CPSF1-211ENST00000533492 NAPAP54920 295 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms