RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TCF3P15923 654 aa6.04□□□□□ -1.44
CD44-235ENST00000532339 MC3RP41968 323 aa6.04□□□□□ -1.44
CD44-235ENST00000532339 IQCEQ6IPM2 695 aa6.04□□□□□ -1.44
CD44-235ENST00000532339 DCP2Q8IU60 420 aaKnown RBP6.04□□□□□ -1.44
CD44-235ENST00000532339 FNIP1Q8TF40 1166 aa6.04□□□□□ -1.44
CD44-235ENST00000532339 CPA5Q8WXQ8 436 aa6.04□□□□□ -1.44
CD44-235ENST00000532339 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.04□□□□□ -1.44
CD44-235ENST00000532339 PRKAG3Q9UGI9 489 aa6.04□□□□□ -1.44
CD44-235ENST00000532339 FAM135BQ49AJ0 1406 aa6.04□□□□□ -1.44
CD44-235ENST00000532339 FOXD2O60548 495 aaPredicted RBP6.03□□□□□ -1.44
CD44-235ENST00000532339 PLA2G1BP04054 148 aaKnown RBP6.03□□□□□ -1.44
CD44-235ENST00000532339 NTRK1P04629 796 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 SYN1P17600 705 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 KCNC1P48547 511 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 HTRA3P83110 453 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 FXNQ16595 210 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 SV2CQ496J9 727 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 VWA3BQ502W6 1294 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 ERICH6BQ5W0A0 696 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 E4F1Q66K89 784 aaPredicted RBP6.03□□□□□ -1.44
CD44-235ENST00000532339 MBLAC2Q68D91 279 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 SAPCD2Q86UD0 394 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 SYT8Q8NBV8 401 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 CXorf38Q8TB03 319 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 PLEKHO2Q8TD55 490 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 BCAS3Q9H6U6 928 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 MARCH2Q9P0N8 246 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 LRP2BPQ9P2M1 347 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 HECW1Q76N89 1606 aa6.03□□□□□ -1.44
CD44-235ENST00000532339 CNTLNQ9NXG0 1405 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 SUSD5O60279 629 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 DDAH1O94760 285 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 HOXC12P31275 282 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 SLURP1P55000 103 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 CACNB2Q08289 660 aaPredicted RBP6.02□□□□□ -1.45
CD44-235ENST00000532339 LIPIQ6XZB0 460 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 FRMD5Q7Z6J6 570 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 ZDHHC14Q8IZN3 488 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 NPLOC4Q8TAT6 608 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 FRS2Q8WU20 508 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 BTN2A2Q8WVV5 523 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 DPF3Q92784 378 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 LGR4Q9BXB1 951 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 AP5M1Q9H0R1 490 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 UGGT2Q9NYU1 1516 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 RAPGEF6Q8TEU7 1601 aa6.02□□□□□ -1.45
CD44-235ENST00000532339 ABCA8O94911 1581 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 VWDEQ8N2E2 1590 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 BIVM-ERCC5R4GMW8 1640 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 SH3D21A4FU49 640 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 B2RBV5 119 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 ITGAVP06756 1048 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 SNRPB2P08579 225 aaKnown RBP6.01□□□□□ -1.45
CD44-235ENST00000532339 ETFBP38117 255 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 BUD31P41223 144 aaPredicted RBP6.01□□□□□ -1.45
CD44-235ENST00000532339 RPL11P62913 178 aaKnown RBP6.01□□□□□ -1.45
CD44-235ENST00000532339 INF2Q27J81 1249 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 ZNF227Q86WZ6 799 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 SMARCC2Q8TAQ2 1214 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 CCDC140Q96MF4 163 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 TEPSINQ96N21 525 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 BTG4Q9NY30 223 aa6.01□□□□□ -1.45
CD44-235ENST00000532339 TIMM13Q9Y5L4 95 aaPredicted RBP6.01□□□□□ -1.45
CD44-235ENST00000532339 C22orf46C9J442 243 aa6□□□□□ -1.45
CD44-235ENST00000532339 MEFVO15553 781 aaPredicted RBP6□□□□□ -1.45
CD44-235ENST00000532339 CPP00450 1065 aa6□□□□□ -1.45
CD44-235ENST00000532339 SCG5P05408 212 aa6□□□□□ -1.45
CD44-235ENST00000532339 ECI1P42126 302 aa6□□□□□ -1.45
CD44-235ENST00000532339 GTF2A2P52657 109 aa6□□□□□ -1.45
CD44-235ENST00000532339 C1QTNF8P60827 252 aa6□□□□□ -1.45
CD44-235ENST00000532339 ARID5AQ03989 594 aa6□□□□□ -1.45
CD44-235ENST00000532339 CYP4F3Q08477 520 aa6□□□□□ -1.45
CD44-235ENST00000532339 KCNAB2Q13303 367 aa6□□□□□ -1.45
CD44-235ENST00000532339 TEX2Q8IWB9 1127 aa6□□□□□ -1.45
CD44-235ENST00000532339 SEC14L1Q92503 715 aa6□□□□□ -1.45
CD44-235ENST00000532339 DIO2Q92813 273 aa6□□□□□ -1.45
CD44-235ENST00000532339 PCDH18Q9HCL0 1135 aa6□□□□□ -1.45
CD44-235ENST00000532339 IGSF5Q9NSI5 407 aa6□□□□□ -1.45
CD44-235ENST00000532339 SIT1Q9Y3P8 196 aa6□□□□□ -1.45
CD44-235ENST00000532339 JCADQ9P266 1359 aa6□□□□□ -1.45
CD44-235ENST00000532339 CFAP74Q9C0B2 1584 aa6□□□□□ -1.45
CD44-235ENST00000532339 CEP170BQ9Y4F5 1589 aaPredicted RBP6□□□□□ -1.45
CD44-235ENST00000532339 ZNF142P52746 1687 aaPredicted RBP6□□□□□ -1.45
CD44-235ENST00000532339 AGLP35573 1532 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 ADAMTS20P59510 1910 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 CEP350Q5VT06 3117 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 TBX1O43435 398 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 MYO1BO43795 1136 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 FGRP09769 529 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 CYP2C8P10632 490 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 SLC6A11P48066 632 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 DLX2Q07687 328 aaPredicted RBP5.99□□□□□ -1.45
CD44-235ENST00000532339 ACBD5Q5T8D3 534 aaPredicted RBP5.99□□□□□ -1.45
CD44-235ENST00000532339 MROH9Q5TGP6 573 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 MEX3CQ5U5Q3 659 aaKnown RBP5.99□□□□□ -1.45
CD44-235ENST00000532339 ETV3LQ6ZN32 361 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 EEPD1Q7L9B9 569 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 RIOX2Q8IUF8 465 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 ADGRG2Q8IZP9 1017 aa5.99□□□□□ -1.45
CD44-235ENST00000532339 ZNF526Q8TF50 670 aaPredicted RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms