RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 MOXD1Q6UVY6 613 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 SEPT14Q6ZU15 432 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 MBOAT7Q96N66 472 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 MXRA8Q9BRK3 442 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 SMC3Q9UQE7 1217 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 DOCK5Q9H7D0 1870 aa16.5■□□□□ 0.23
CPSF1-206ENST00000531480 DNAH12Q6ZR08 3092 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 CYP3A7-CYP3A51PA0A087WV96 503 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 BTBD18B2RXH4 712 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 FAM86B1E9PN63 330 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 DNM1LO00429 736 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 FAM86B2P0C5J1 330 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 COL6A1P12109 1028 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 CYP3A7P24462 503 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 SP2Q02086 613 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 NR5A1Q13285 461 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 BECN1Q14457 450 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 NONOQ15233 471 aaKnown RBP eCLIP16.49■□□□□ 0.23
CPSF1-206ENST00000531480 EARS2Q5JPH6 523 aaKnown RBP16.49■□□□□ 0.23
CPSF1-206ENST00000531480 ANO1Q5XXA6 986 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 TLK2Q86UE8 772 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 NLRX1Q86UT6 975 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 HSCBQ8IWL3 235 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 DIS3L2Q8IYB7 885 aaKnown RBP16.49■□□□□ 0.23
CPSF1-206ENST00000531480 ARRDC4Q8NCT1 418 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 CYP2W1Q8TAV3 490 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 TBCKQ8TEA7 893 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 LENG9Q96B70 501 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 CDHR1Q96JP9 859 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 TSEN34Q9BSV6 310 aaKnown RBP16.49■□□□□ 0.23
CPSF1-206ENST00000531480 FOXP1Q9H334 677 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-206ENST00000531480 BRMS1Q9HCU9 246 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 RTEL1Q9NZ71 1219 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 MRVI1Q9Y6F6 885 aa16.49■□□□□ 0.23
CPSF1-206ENST00000531480 A6NJR5 290 aa16.48■□□□□ 0.23
CPSF1-206ENST00000531480 PGK1P00558 417 aa16.48■□□□□ 0.23
CPSF1-206ENST00000531480 TFRCP02786 760 aaKnown RBP16.48■□□□□ 0.23
CPSF1-206ENST00000531480 HOXD8P13378 290 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-206ENST00000531480 UBA1P22314 1058 aaKnown RBP16.48■□□□□ 0.23
CPSF1-206ENST00000531480 U2AF2P26368 475 aaKnown RBP eCLIP16.48■□□□□ 0.23
CPSF1-206ENST00000531480 ARHGAP1Q07960 439 aa16.48■□□□□ 0.23
CPSF1-206ENST00000531480 LY6KQ17RY6 165 aa16.48■□□□□ 0.23
CPSF1-206ENST00000531480 GJC2Q5T442 439 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-206ENST00000531480 ZFP91Q96JP5 570 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-206ENST00000531480 CCDC194A0A1B0GVG4 234 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 MYADML2A6NDP7 307 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 GH1P01241 217 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 KCNA2P16389 499 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 PTGS1P23219 599 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 MTMR1Q13613 665 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 CELF3Q5SZQ8 465 aaKnown RBP16.47■□□□□ 0.23
CPSF1-206ENST00000531480 MYSM1Q5VVJ2 828 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 RNF180Q86T96 592 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 COPS5Q92905 334 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 KCNH7Q9NS40 1196 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 PHF24Q9UPV7 400 aa16.47■□□□□ 0.23
CPSF1-206ENST00000531480 DYNC1LI2O43237 492 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-206ENST00000531480 ATP9AO75110 1047 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 SETQ01105 290 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-206ENST00000531480 NEDD9Q14511 834 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 SAFBQ15424 915 aaKnown RBP eCLIP16.46■□□□□ 0.23
CPSF1-206ENST00000531480 INF2Q27J81 1249 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 Q4G0T1 1027 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 PPP4R3AQ6IN85 833 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 METTL7BQ6UX53 244 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 PIK3AP1Q6ZUJ8 805 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 NEK8Q86SG6 692 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 SPC25Q9HBM1 224 aa16.46■□□□□ 0.23
CPSF1-206ENST00000531480 SCN10AQ9Y5Y9 1956 aa16.46■□□□□ 0.22
CPSF1-206ENST00000531480 NFASCO94856 1347 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 FAM205CA6NFA0 338 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 MOXD2PA6NHM9 499 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 FARP2O94887 1054 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-206ENST00000531480 C6orf222P0C671 652 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-206ENST00000531480 ARP10275 920 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 FOSBP53539 338 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 IRX5P78411 483 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-206ENST00000531480 GUCY1B3Q02153 619 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 LAMC2Q13753 1193 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 FSCN1Q16658 493 aaKnown RBP16.45■□□□□ 0.22
CPSF1-206ENST00000531480 NOSTRINQ8IVI9 506 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 PCSK9Q8NBP7 692 aaKnown RBP16.45■□□□□ 0.22
CPSF1-206ENST00000531480 GIMAP8Q8ND71 665 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-206ENST00000531480 PPTC7Q8NI37 304 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 AP5M1Q9H0R1 490 aa16.45■□□□□ 0.22
CPSF1-206ENST00000531480 AGO4Q9HCK5 861 aaKnown RBP16.45■□□□□ 0.22
CPSF1-206ENST00000531480 KIF28PB7ZC32 967 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 DHX15O43143 795 aaKnown RBP16.44■□□□□ 0.22
CPSF1-206ENST00000531480 GGPS1O95749 300 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 GCFC2P16383 781 aaKnown RBP16.44■□□□□ 0.22
CPSF1-206ENST00000531480 PDCP20941 246 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 CPT1AP50416 773 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 ITGB3BPQ13352 177 aaPredicted RBP16.44■□□□□ 0.22
CPSF1-206ENST00000531480 KCNA10Q16322 511 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 GNASQ5JWF2 1037 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 LARP1BQ659C4 914 aaKnown RBP16.44■□□□□ 0.22
CPSF1-206ENST00000531480 PLA2G4DQ86XP0 818 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 OR6J1Q8NGC5 347 aa16.44■□□□□ 0.22
CPSF1-206ENST00000531480 DIS3LQ8TF46 1054 aaKnown RBP16.44■□□□□ 0.22
CPSF1-206ENST00000531480 NAP1L4Q99733 375 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms