RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ADD3Q9UEY8 706 aaKnown RBP23.15■■□□□ 1.3
VPS28-209ENST00000528142 LIMA1Q9UHB6 759 aaKnown RBP23.15■■□□□ 1.3
VPS28-209ENST00000528142 STK24Q9Y6E0 443 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 C19orf81C9J6K1 198 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 E9PMD0 336 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 SPATA31C1P0DKV0 1188 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 SKILP12757 684 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 PPP1R2P41236 205 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 UBXN2AP68543 259 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 EHHADHQ08426 723 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 TBX2Q13207 712 aaPredicted RBP23.15■■□□□ 1.3
VPS28-209ENST00000528142 CEP55Q53EZ4 464 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 NCAPH2Q6IBW4 605 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 TTI2Q6NXR4 508 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 DYMQ7RTS9 669 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 CATSPER3Q86XQ3 398 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 KIAA0895Q8NCT3 520 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 ERMNQ8TAM6 284 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 CTAGE1Q96RT6 745 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 PNMA2Q9UL42 364 aa23.15■■□□□ 1.3
VPS28-209ENST00000528142 TRIM49BA6NDI0 452 aa23.14■■□□□ 1.29
VPS28-209ENST00000528142 VWA5AO00534 786 aa23.14■■□□□ 1.29
VPS28-209ENST00000528142 ZBED4O75132 1171 aa23.14■■□□□ 1.29
VPS28-209ENST00000528142 USP2O75604 605 aaPredicted RBP23.14■■□□□ 1.29
VPS28-209ENST00000528142 RPA1P27694 616 aa23.14■■□□□ 1.29
VPS28-209ENST00000528142 PTPN21Q16825 1174 aa23.14■■□□□ 1.29
VPS28-209ENST00000528142 SLC5A5Q92911 643 aa23.14■■□□□ 1.29
VPS28-209ENST00000528142 DNAJC19Q96DA6 116 aa23.14■■□□□ 1.29
VPS28-209ENST00000528142 MEIS1O00470 390 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 PLA2G4BP0C869 781 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 ALAS1P13196 640 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 HMGCS2P54868 508 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 MUM1L1Q5H9M0 696 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 IRF2BP1Q8IU81 584 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 SAMD3Q8N6K7 520 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 HPS3Q969F9 1004 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 MAP3K20Q9NYL2 800 aaKnown RBP23.13■■□□□ 1.29
VPS28-209ENST00000528142 RABGAP1Q9Y3P9 1069 aa23.13■■□□□ 1.29
VPS28-209ENST00000528142 PSMD10O75832 226 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 SFPQP23246 707 aaKnown RBP eCLIP23.12■■□□□ 1.29
VPS28-209ENST00000528142 CCNE1P24864 410 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 EPHX2P34913 555 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 SPAG1Q07617 926 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.12■■□□□ 1.29
VPS28-209ENST00000528142 OTOP1Q7RTM1 612 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 ATG4CQ96DT6 458 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 EML1O00423 815 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 HOXA7P31268 230 aaPredicted RBP23.12■■□□□ 1.29
VPS28-209ENST00000528142 PBX1P40424 430 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 KRT31Q15323 416 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 TCP11X2Q5H9J9 407 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 SPECC1LQ69YQ0 1117 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 REPS2Q8NFH8 660 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 P2RX5Q93086 422 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 WNK4Q96J92 1243 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 DUSP9Q99956 384 aaKnown RBP23.12■■□□□ 1.29
VPS28-209ENST00000528142 POLR3CQ9BUI4 534 aaPredicted RBP23.12■■□□□ 1.29
VPS28-209ENST00000528142 SLC39A2Q9NP94 309 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 ADAMTS5Q9UNA0 930 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 AFG3L2Q9Y4W6 797 aa23.12■■□□□ 1.29
VPS28-209ENST00000528142 WDR90Q96KV7 1748 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 POTEFA5A3E0 1075 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 ADM5C9JUS6 153 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 TEX33O43247 280 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 POTEIP0CG38 1075 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 PSMD2Q13200 908 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 POTEGQ6S5H5 508 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 POTEEQ6S8J3 1075 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 SYTL5Q8TDW5 730 aaPredicted RBP23.11■■□□□ 1.29
VPS28-209ENST00000528142 THAP9Q9H5L6 903 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 SCN4AP35499 1836 aa23.11■■□□□ 1.29
VPS28-209ENST00000528142 KCNJ18B7U540 433 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 SLC12A3P55017 1021 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 PPP2R5CQ13362 524 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 KCNJ12Q14500 433 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 MXRA8Q9BRK3 442 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 TAF1DQ9H5J8 278 aaPredicted RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 BICDL2A1A5D9 508 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 ARP10275 920 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 IDEP14735 1019 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 CYP11B2P19099 503 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 DSG3P32926 999 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 SETQ01105 290 aaPredicted RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 LRCH2Q5VUJ6 765 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 ANKRD40Q6AI12 368 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 NOC3LQ8WTT2 800 aaKnown RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 DCPSQ96C86 337 aaKnown RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 ZFP91Q96JP5 570 aaPredicted RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 EIF2AK1Q9BQI3 630 aaKnown RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 HOMER2Q9NSB8 354 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 BMP2KQ9NSY1 1161 aaPredicted RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 CTDP1Q9Y5B0 961 aaPredicted RBP23.1■■□□□ 1.29
VPS28-209ENST00000528142 SNCAIPQ9Y6H5 919 aa23.1■■□□□ 1.29
VPS28-209ENST00000528142 FRMPD4Q14CM0 1322 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 PHIPQ8WWQ0 1821 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 SSBP05455 408 aaKnown RBP eCLIP23.09■■□□□ 1.29
VPS28-209ENST00000528142 ITGB5P18084 799 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 PSMC6P62333 389 aa23.09■■□□□ 1.29
VPS28-209ENST00000528142 PRKG1Q13976 671 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms