RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 RTEL1Q9NZ71 1219 aa3.72□□□□□ -1.81
CD44-216ENST00000525293 BLACEA4D250 179 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 CCDC85CA6NKD9 419 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 TADA3O75528 432 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 DGKIO75912 1065 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 FGFR1P11362 822 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 PABPC1P11940 636 aaKnown RBP3.71□□□□□ -1.82
CD44-216ENST00000525293 ATP2B1P20020 1258 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 SARSP49591 514 aaKnown RBP3.71□□□□□ -1.82
CD44-216ENST00000525293 CHRNA2Q15822 529 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 CR1LQ2VPA4 569 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 YOD1Q5VVQ6 348 aaPredicted RBP3.71□□□□□ -1.82
CD44-216ENST00000525293 KRTAP5-3Q6L8H2 238 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 KCNT2Q6UVM3 1135 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 NSMFQ6X4W1 530 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 ZC3H18Q86VM9 953 aaKnown RBP3.71□□□□□ -1.82
CD44-216ENST00000525293 FAM126BQ8IXS8 530 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 LRRC47Q8N1G4 583 aaKnown RBP3.71□□□□□ -1.82
CD44-216ENST00000525293 KYQ8NBH2 561 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 ARRDC4Q8NCT1 418 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.71□□□□□ -1.82
CD44-216ENST00000525293 OSBP2Q969R2 916 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 CDIP1Q9H305 208 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 EPB41L1Q9H4G0 881 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 PCDH18Q9HCL0 1135 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 USP40Q9NVE5 1235 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 NTMQ9P121 344 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 PPARGC1AQ9UBK2 798 aaKnown RBP3.71□□□□□ -1.82
CD44-216ENST00000525293 ZNF652Q9Y2D9 606 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 PCDHB4Q9Y5E5 795 aa3.71□□□□□ -1.82
CD44-216ENST00000525293 NCANO14594 1321 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 TRAV20A0A0B4J274 112 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 TCRBV5S2A0A599 114 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 PDPK1O15530 556 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 SYN1P17600 705 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 GTF2F1P35269 517 aaKnown RBP eCLIP3.7□□□□□ -1.82
CD44-216ENST00000525293 BUD31P41223 144 aaPredicted RBP3.7□□□□□ -1.82
CD44-216ENST00000525293 ITGA1P56199 1179 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 NKX3-2P78367 333 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 IFRD2Q12894 506 aaPredicted RBP3.7□□□□□ -1.82
CD44-216ENST00000525293 NTRK3Q16288 839 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 RSPO2Q6UXX9 243 aaPredicted RBP3.7□□□□□ -1.82
CD44-216ENST00000525293 SPATC1Q76KD6 591 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 FRMD5Q7Z6J6 570 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 FERMT3Q86UX7 667 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 CXorf38Q8TB03 319 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 DCAF4Q8WV16 495 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 DDX1Q92499 740 aaKnown RBP3.7□□□□□ -1.82
CD44-216ENST00000525293 TOE1Q96GM8 510 aaKnown RBP3.7□□□□□ -1.82
CD44-216ENST00000525293 TEPSINQ96N21 525 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 SPATA9Q9BWV2 254 aa3.7□□□□□ -1.82
CD44-216ENST00000525293 NGRNQ9NPE2 291 aaKnown RBP3.7□□□□□ -1.82
CD44-216ENST00000525293 KRIT1O00522 736 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 PRICKLE3O43900 615 aaPredicted RBP3.69□□□□□ -1.82
CD44-216ENST00000525293 NOBOXO60393 691 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 MAFKO60675 156 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 COL6A2P12110 1019 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 THBS2P35442 1172 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 GJA9P57773 515 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 RTP5Q14D33 572 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 MTERF2Q49AM1 385 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 EMC4Q5J8M3 183 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 UBXN11Q5T124 520 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 LBX2Q6XYB7 198 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 ZNF761Q86XN6 746 aaPredicted RBP3.69□□□□□ -1.82
CD44-216ENST00000525293 RBM12BQ8IXT5 1001 aaKnown RBP3.69□□□□□ -1.82
CD44-216ENST00000525293 TTLL6Q8N841 843 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 PIP4K2CQ8TBX8 421 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 KCNJ15Q99712 375 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 KRTAP9-3Q9BYQ3 159 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 SMOC1Q9H4F8 434 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 DTLQ9NZJ0 730 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 MYOTQ9UBF9 498 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 PFDN2Q9UHV9 154 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 MSRB2Q9Y3D2 182 aa3.69□□□□□ -1.82
CD44-216ENST00000525293 DDX3XO00571 662 aaKnown RBP eCLIP3.68□□□□□ -1.82
CD44-216ENST00000525293 SLC27A2O14975 620 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 LRG1P02750 347 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 CELA3BP08861 270 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 RPL13P26373 211 aaKnown RBP3.68□□□□□ -1.82
CD44-216ENST00000525293 GRIN1Q05586 938 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 ADAM9Q13443 819 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 RASGRF1Q13972 1273 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 RGL3Q3MIN7 710 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 MCTP2Q6DN12 878 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 TEPPQ6URK8 271 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 SCUBE1Q8IWY4 988 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 IFNL3Q8IZI9 196 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 PHOSPHO1Q8TCT1 267 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 ADAMTS17Q8TE56 1095 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 CLEC4DQ8WXI8 215 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 ZNF669Q96BR6 464 aaPredicted RBP3.68□□□□□ -1.82
CD44-216ENST00000525293 ZSWIM3Q96MP5 696 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 C8orf37Q96NL8 207 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 BDH2Q9BUT1 245 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 CCDC113Q9H0I3 377 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 SLC6A20Q9NP91 592 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 ASH2LQ9UBL3 628 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 TRAF6Q9Y4K3 522 aa3.68□□□□□ -1.82
CD44-216ENST00000525293 DUSP10Q9Y6W6 482 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms