RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TYW1BQ6NUM6 668 aa24■■□□□ 1.43
VPS28-203ENST00000524521 NFRKBQ6P4R8 1299 aa24■■□□□ 1.43
VPS28-203ENST00000524521 TM6SF1Q9BZW5 370 aa24■■□□□ 1.43
VPS28-203ENST00000524521 PCDHA6Q9UN73 950 aa24■■□□□ 1.43
VPS28-203ENST00000524521 PCDHA8Q9Y5H6 950 aa24■■□□□ 1.43
VPS28-203ENST00000524521 SPATA31C2B4DYI2 1134 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 hCG_1984214I3L0E3 225 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 STXBP3O00186 592 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 CSF2RAP15509 400 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 ICAM3P32942 547 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 HSDL1Q3SXM5 330 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 ZNF713Q8N859 430 aaPredicted RBP23.99■■□□□ 1.43
VPS28-203ENST00000524521 KAT2BQ92831 832 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 UPF3BQ9BZI7 483 aaKnown RBP23.99■■□□□ 1.43
VPS28-203ENST00000524521 BCAS3Q9H6U6 928 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 RIC8AQ9NPQ8 531 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 BARHL2Q9NY43 387 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 SCN10AQ9Y5Y9 1956 aa23.99■■□□□ 1.43
VPS28-203ENST00000524521 SMCO2A6NFE2 343 aa23.98■■□□□ 1.43
VPS28-203ENST00000524521 FIBPO43427 364 aa23.98■■□□□ 1.43
VPS28-203ENST00000524521 PPFIA4O75335 1185 aa23.98■■□□□ 1.43
VPS28-203ENST00000524521 CYP2C9P11712 490 aa23.98■■□□□ 1.43
VPS28-203ENST00000524521 PDIA3P30101 505 aaKnown RBP23.98■■□□□ 1.43
VPS28-203ENST00000524521 CCT2P78371 535 aaKnown RBP23.98■■□□□ 1.43
VPS28-203ENST00000524521 PTPN11Q06124 597 aaPredicted RBP23.98■■□□□ 1.43
VPS28-203ENST00000524521 PPIGQ13427 754 aaKnown RBP eCLIP23.98■■□□□ 1.432e-11■□□□□ 9.5
VPS28-203ENST00000524521 TOB2Q14106 344 aaPredicted RBP23.98■■□□□ 1.43
VPS28-203ENST00000524521 PPP1R18Q6NYC8 613 aa23.98■■□□□ 1.43
VPS28-203ENST00000524521 NLRX1Q86UT6 975 aa23.98■■□□□ 1.43
VPS28-203ENST00000524521 NOC4LQ9BVI4 516 aaKnown RBP23.98■■□□□ 1.43
VPS28-203ENST00000524521 UMODL1Q5DID0 1318 aa23.98■■□□□ 1.43
VPS28-203ENST00000524521 ZNF286BP0CG31 522 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 ADCY7P51828 1080 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 CCL23P55773 120 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 EVCP57679 992 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 SEMA3FQ13275 785 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 NEDD9Q14511 834 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 PFKFB3Q16875 520 aaPredicted RBP23.97■■□□□ 1.43
VPS28-203ENST00000524521 LARP6Q9BRS8 491 aaKnown RBP23.97■■□□□ 1.43
VPS28-203ENST00000524521 ALG1Q9BT22 464 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 EHMT1Q9H9B1 1298 aa23.97■■□□□ 1.43
VPS28-203ENST00000524521 NID2Q14112 1375 aa23.96■■□□□ 1.43
VPS28-203ENST00000524521 PRPF3O43395 683 aaKnown RBP23.96■■□□□ 1.43
VPS28-203ENST00000524521 SCG2P13521 617 aa23.96■■□□□ 1.43
VPS28-203ENST00000524521 PSEN2P49810 448 aa23.96■■□□□ 1.43
VPS28-203ENST00000524521 AKAP17AQ02040 695 aaKnown RBP23.96■■□□□ 1.43
VPS28-203ENST00000524521 CYFIP1Q7L576 1253 aa23.96■■□□□ 1.43
VPS28-203ENST00000524521 PHKBQ93100 1093 aa23.96■■□□□ 1.43
VPS28-203ENST00000524521 RNPC3Q96LT9 517 aaKnown RBP23.96■■□□□ 1.43
VPS28-203ENST00000524521 NCOA5Q9HCD5 579 aaKnown RBP23.96■■□□□ 1.43
VPS28-203ENST00000524521 PDRG1Q9NUG6 133 aa23.96■■□□□ 1.43
VPS28-203ENST00000524521 NOD1Q9Y239 953 aa23.96■■□□□ 1.43
VPS28-203ENST00000524521 PPFIA3O75145 1194 aa23.95■■□□□ 1.42
VPS28-203ENST00000524521 ACRP10323 421 aa23.95■■□□□ 1.42
VPS28-203ENST00000524521 MFSD10Q14728 455 aa23.95■■□□□ 1.42
VPS28-203ENST00000524521 C16orf59Q7L2K0 433 aa23.95■■□□□ 1.42
VPS28-203ENST00000524521 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.95■■□□□ 1.421e-8■■□□□ 12.5
VPS28-203ENST00000524521 KATNAL1Q9BW62 490 aa23.95■■□□□ 1.42
VPS28-203ENST00000524521 GLT8D2Q9H1C3 349 aa23.95■■□□□ 1.42
VPS28-203ENST00000524521 NOP56O00567 594 aaKnown RBP23.94■■□□□ 1.42
VPS28-203ENST00000524521 FOSP01100 380 aaPredicted RBP23.94■■□□□ 1.42
VPS28-203ENST00000524521 HOXD8P13378 290 aaPredicted RBP23.94■■□□□ 1.42
VPS28-203ENST00000524521 NTRK3Q16288 839 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 PTGISQ16647 500 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 KIAA0753Q2KHM9 967 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 GPR153Q6NV75 609 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 TEX2Q8IWB9 1127 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 C7orf31Q8N865 590 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 GPRASP2Q96D09 838 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 PGBD1Q96JS3 809 aa23.94■■□□□ 1.42
VPS28-203ENST00000524521 F2P00734 622 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 IFNAR1P17181 557 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 ITGB5P18084 799 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 PKN1Q16512 942 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 TMEM240Q5SV17 173 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 METTL7BQ6UX53 244 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 ZNF365Q70YC5 407 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 ZNF274Q96GC6 653 aaPredicted RBP23.93■■□□□ 1.42
VPS28-203ENST00000524521 SCLYQ96I15 445 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 CDHR1Q96JP9 859 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 SENP7Q9BQF6 1050 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 SLC26A6Q9BXS9 759 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 WNT8AQ9H1J5 351 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 IL23AQ9NPF7 189 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 TMEM260Q9NX78 707 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 HDAC6Q9UBN7 1215 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 UBIAD1Q9Y5Z9 338 aa23.93■■□□□ 1.42
VPS28-203ENST00000524521 HAS3O00219 553 aa23.92■■□□□ 1.42
VPS28-203ENST00000524521 SP4Q02446 784 aa23.92■■□□□ 1.42
VPS28-203ENST00000524521 GDF6Q6KF10 455 aaPredicted RBP23.92■■□□□ 1.42
VPS28-203ENST00000524521 SESTD1Q86VW0 696 aa23.92■■□□□ 1.42
VPS28-203ENST00000524521 GIMAP8Q8ND71 665 aaPredicted RBP23.92■■□□□ 1.42
VPS28-203ENST00000524521 C16orf70Q9BSU1 422 aa23.92■■□□□ 1.42
VPS28-203ENST00000524521 RNF26Q9BY78 433 aaPredicted RBP23.92■■□□□ 1.42
VPS28-203ENST00000524521 ANO3Q9BYT9 981 aa23.92■■□□□ 1.42
VPS28-203ENST00000524521 ATP9AO75110 1047 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 STK3Q13188 491 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 MTMR1Q13613 665 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 JAKMIP3Q5VZ66 844 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 RETREG2Q8NC44 543 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms