RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 SCFD2Q8WU76 684 aa17.41■□□□□ 0.38
LSM1-203ENST00000520755 USP28Q96RU2 1077 aa17.41■□□□□ 0.38
LSM1-203ENST00000520755 WDR11Q9BZH6 1224 aa17.41■□□□□ 0.38
LSM1-203ENST00000520755 PCDHB6Q9Y5E3 794 aa17.41■□□□□ 0.38
LSM1-203ENST00000520755 MRVI1Q9Y6F6 885 aa17.41■□□□□ 0.38
LSM1-203ENST00000520755 RBM47A0AV96 593 aaKnown RBP17.4■□□□□ 0.38
LSM1-203ENST00000520755 POTEFA5A3E0 1075 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 STAM2O75886 525 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 RGS20O76081 388 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 TXNP10599 105 aaKnown RBP17.4■□□□□ 0.38
LSM1-203ENST00000520755 SMPD1P17405 629 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 PTGS1P23219 599 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 ZNF76P36508 570 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 TRAPPC10P48553 1259 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 SOX10P56693 466 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 DNM1Q05193 864 aaKnown RBP17.4■□□□□ 0.38
LSM1-203ENST00000520755 TTLL4Q14679 1199 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 GNPTABQ3T906 1256 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 RILPL1Q5EBL4 403 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 TTC38Q5R3I4 469 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 GJC2Q5T442 439 aaPredicted RBP17.4■□□□□ 0.38
LSM1-203ENST00000520755 LHX8Q68G74 356 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 IQSEC1Q6DN90 963 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 LENG9Q96B70 501 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 MBOAT7Q96N66 472 aa17.4■□□□□ 0.38
LSM1-203ENST00000520755 IGLV3-22A0A075B6J6 115 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 FAM86B1E9PN63 330 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 SLC37A4O43826 429 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 DUSP11O75319 330 aaKnown RBP17.39■□□□□ 0.37
LSM1-203ENST00000520755 ARIH2O95376 493 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 SGPL1O95470 568 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 TFRCP02786 760 aaKnown RBP17.39■□□□□ 0.37
LSM1-203ENST00000520755 MYCNP04198 464 aaPredicted RBP17.39■□□□□ 0.37
LSM1-203ENST00000520755 FAM86B2P0C5J1 330 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 ITGB5P18084 799 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 ATP2B1P20020 1258 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 CIITAP33076 1130 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 LETM2Q2VYF4 491 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 NLRX1Q86UT6 975 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 INPP4AQ96PE3 977 aaPredicted RBP17.39■□□□□ 0.37
LSM1-203ENST00000520755 XPNPEP3Q9NQH7 507 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.39■□□□□ 0.37
LSM1-203ENST00000520755 NOL7Q9UMY1 257 aaKnown RBP17.39■□□□□ 0.37
LSM1-203ENST00000520755 UBIAD1Q9Y5Z9 338 aa17.39■□□□□ 0.37
LSM1-203ENST00000520755 KIAA0100Q14667 2235 aaKnown RBP17.39■□□□□ 0.37
LSM1-203ENST00000520755 PGK1P00558 417 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 GJA8P48165 433 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 USP11P51784 963 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 LY6KQ17RY6 165 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 DUSP28Q4G0W2 176 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 MOXD1Q6UVY6 613 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 CYP2W1Q8TAV3 490 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 COPS5Q92905 334 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 MXRA8Q9BRK3 442 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 JADE2Q9NQC1 790 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 CLIC4Q9Y696 253 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 SYNRGQ9UMZ2 1314 aa17.38■□□□□ 0.37
LSM1-203ENST00000520755 CYP3A7-CYP3A51PA0A087WV96 503 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 FIBPO43427 364 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 SORBS3O60504 671 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 CCNT1O60563 726 aaKnown RBP17.37■□□□□ 0.37
LSM1-203ENST00000520755 CYP3A7P24462 503 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 NASPP49321 788 aaPredicted RBP17.37■□□□□ 0.37
LSM1-203ENST00000520755 MTMR1Q13613 665 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 PTPAQ15257 358 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 CEP55Q53EZ4 464 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 CCDC62Q6P9F0 684 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 KCNV1Q6PIU1 500 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 TLK2Q86UE8 772 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 POTEDQ86YR6 584 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 GPRASP2Q96D09 838 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 CRISPLD2Q9H0B8 497 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 TMEM60Q9H2L4 133 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 PKD2L1Q9P0L9 805 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 TFIP11Q9UBB9 837 aaKnown RBP17.37■□□□□ 0.37
LSM1-203ENST00000520755 DDX41Q9UJV9 622 aaKnown RBP17.37■□□□□ 0.37
LSM1-203ENST00000520755 OGDHLQ9ULD0 1010 aa17.37■□□□□ 0.37
LSM1-203ENST00000520755 GNEQ9Y223 722 aaKnown RBP17.37■□□□□ 0.37
LSM1-203ENST00000520755 SPATA31C2B4DYI2 1134 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 NKRFO15226 690 aaKnown RBP eCLIP17.36■□□□□ 0.37
LSM1-203ENST00000520755 DYNC1LI2O43237 492 aaPredicted RBP17.36■□□□□ 0.37
LSM1-203ENST00000520755 C6orf222P0C671 652 aaPredicted RBP17.36■□□□□ 0.37
LSM1-203ENST00000520755 EN2P19622 333 aaPredicted RBP17.36■□□□□ 0.37
LSM1-203ENST00000520755 ICAM3P32942 547 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 MCM7P33993 719 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 SEMA3FQ13275 785 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 SF3A1Q15459 793 aaKnown RBP17.36■□□□□ 0.37
LSM1-203ENST00000520755 ZNF174Q15697 407 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 PPP4R3AQ6IN85 833 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 C4orf32Q8N8J7 132 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 OR6J1Q8NGC5 347 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 AP5M1Q9H0R1 490 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 POLR3EQ9NVU0 708 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 ATP6V1DQ9Y5K8 247 aa17.36■□□□□ 0.37
LSM1-203ENST00000520755 ARP10275 920 aa17.35■□□□□ 0.37
LSM1-203ENST00000520755 GCFC2P16383 781 aaKnown RBP17.35■□□□□ 0.37
LSM1-203ENST00000520755 UBA1P22314 1058 aaKnown RBP17.35■□□□□ 0.37
LSM1-203ENST00000520755 IRX5P78411 483 aaPredicted RBP17.35■□□□□ 0.37
LSM1-203ENST00000520755 SP2Q02086 613 aa17.35■□□□□ 0.37
LSM1-203ENST00000520755 CEBPZQ03701 1054 aaKnown RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms