RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CAGE1Q8TC20 777 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 MYLIPQ8WY64 445 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 KAT2BQ92831 832 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 ZFP91Q96JP5 570 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-215ENST00000515516 PBX4Q9BYU1 374 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 PSTPIP2Q9H939 334 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 RBM28Q9NW13 759 aaKnown RBP15.74■□□□□ 0.11
TCOF1-215ENST00000515516 CXXC1Q9P0U4 656 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-215ENST00000515516 PIK3CDO00329 1044 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 NOP56O00567 594 aaKnown RBP15.73■□□□□ 0.11
TCOF1-215ENST00000515516 HMGB1P09429 215 aaKnown RBP15.73■□□□□ 0.11
TCOF1-215ENST00000515516 ZNF286BP0CG31 522 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 UBA1P22314 1058 aaKnown RBP15.73■□□□□ 0.11
TCOF1-215ENST00000515516 NEDD9Q14511 834 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 GDF6Q6KF10 455 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-215ENST00000515516 USP17L6PQ6QN14 398 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 TMTC3Q6ZXV5 915 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 NLRX1Q86UT6 975 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 RTEL1Q9NZ71 1219 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 HDAC6Q9UBN7 1215 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 GTF2IRD1Q9UHL9 959 aa15.73■□□□□ 0.11
TCOF1-215ENST00000515516 FIBPO43427 364 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 F2P00734 622 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 NEFLP07196 543 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 ICAM3P32942 547 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 PBX2P40425 430 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 SP2Q02086 613 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 GRIN2CQ14957 1233 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 HSDL1Q3SXM5 330 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 TSGA10IPQ3SY00 556 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 PCNX4Q63HM2 1172 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 HEATR3Q7Z4Q2 680 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 MAFAQ8NHW3 353 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-215ENST00000515516 AFAP1L1Q8TED9 768 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 INPP4AQ96PE3 977 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-215ENST00000515516 EHMT1Q9H9B1 1298 aa15.72■□□□□ 0.11
TCOF1-215ENST00000515516 NAP1L2Q9ULW6 460 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-215ENST00000515516 FRMPD4Q14CM0 1322 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 hCG_1642624A0A1W2PR95 340 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 SPDYE3A6NKU9 549 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 SPATA31C2B4DYI2 1134 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 MEIS2O14770 477 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 ZBTB43O43298 467 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 PARNO95453 639 aaKnown RBP15.71■□□□□ 0.11
TCOF1-215ENST00000515516 SELPP16109 830 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 ATP2A2P16615 1042 aaKnown RBP15.71■□□□□ 0.11
TCOF1-215ENST00000515516 MRPS9P82933 396 aaKnown RBP15.71■□□□□ 0.11
TCOF1-215ENST00000515516 RTN1Q16799 776 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 GIMAP8Q8ND71 665 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-215ENST00000515516 GPKOWQ92917 476 aaPredicted RBP eCLIP15.71■□□□□ 0.11
TCOF1-215ENST00000515516 GAS2L1Q99501 681 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-215ENST00000515516 SLC28A3Q9HAS3 691 aa15.71■□□□□ 0.11
TCOF1-215ENST00000515516 HAS3O00219 553 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 HOXD8P13378 290 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-215ENST00000515516 EXOSC10Q01780 885 aaKnown RBP15.7■□□□□ 0.1
TCOF1-215ENST00000515516 PTK7Q13308 1070 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 COL9A3Q14050 684 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-215ENST00000515516 APOA5Q6Q788 366 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 METTL7BQ6UX53 244 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 LRRC8DQ7L1W4 858 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 CYFIP1Q7L576 1253 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 RASEFQ8IZ41 740 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 CDHR1Q96JP9 859 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 TCEANC2Q96MN5 208 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 USP26Q9BXU7 913 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 NKX2-4Q9H2Z4 354 aa15.7■□□□□ 0.1
TCOF1-215ENST00000515516 KLF18A0A0U1RQI7 1052 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 GOLGA8AA7E2F4 631 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 GOLGA8BA8MQT2 603 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 H3BRB1 525 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 DLL1O00548 723 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 RABGGTBP53611 331 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.69■□□□□ 0.19e-8■□□□□ 9.8
TCOF1-215ENST00000515516 PHOSPHO2Q8TCD6 241 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 SENP7Q9BQF6 1050 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 TUT1Q9H6E5 874 aaKnown RBP15.69■□□□□ 0.1
TCOF1-215ENST00000515516 PCDHA11Q9Y5I1 949 aa15.69■□□□□ 0.1
TCOF1-215ENST00000515516 C17orf102A2RUQ5 167 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 KIF28PB7ZC32 967 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 BAIAP3O94812 1187 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 REC8O95072 547 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 LGALS2P05162 132 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 GNAT1P11488 350 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 CKBP12277 381 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 KCNJ6P48051 423 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 NAPAP54920 295 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 UBE2SQ16763 222 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 ADCK5Q3MIX3 580 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 GPRASP2Q96D09 838 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 VWCEQ96DN2 955 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 SLC9A7Q96T83 725 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 C16orf70Q9BSU1 422 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 ZNF215Q9UL58 517 aaPredicted RBP15.68■□□□□ 0.1
TCOF1-215ENST00000515516 BRPF3Q9ULD4 1205 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 PCDHA6Q9UN73 950 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 PCDHA8Q9Y5H6 950 aa15.68■□□□□ 0.1
TCOF1-215ENST00000515516 V9GY48 417 aaPredicted RBP15.68■□□□□ 0.1
TCOF1-215ENST00000515516 CCDC196A0A1B0GTZ2 297 aa15.67■□□□□ 0.1
TCOF1-215ENST00000515516 ZNF200P98182 395 aaPredicted RBP15.67■□□□□ 0.1
TCOF1-215ENST00000515516 SP4Q02446 784 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms