RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 LRRN4CLQ8ND94 238 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 SAMSN1Q9NSI8 373 aaKnown RBP14.34□□□□□ -0.11
TCOF1-213ENST00000514442 PTPROQ16827 1216 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 BEND6Q5SZJ8 279 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-213ENST00000514442 RBM43Q6ZSC3 357 aaKnown RBP14.34□□□□□ -0.11
TCOF1-213ENST00000514442 OTUD6AQ7L8S5 288 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 BRIP1Q9BX63 1249 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 TRIM31Q9BZY9 425 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 CD209Q9NNX6 404 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 BATF3Q9NR55 127 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 MTUS1Q9ULD2 1270 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 TARSL2A2RTX5 802 aaKnown RBP14.34□□□□□ -0.11
TCOF1-213ENST00000514442 BMP3P12645 472 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 SCP2P22307 547 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 COPB1P53618 953 aaKnown RBP14.34□□□□□ -0.11
TCOF1-213ENST00000514442 CRYMQ14894 314 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 LRRC41Q15345 812 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 TAF11Q15544 211 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 FAM178BQ8IXR5 827 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 DEPTORQ8TB45 409 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 GJA10Q969M2 543 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 IQCDQ96DY2 449 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 GJD4Q96KN9 370 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-213ENST00000514442 NKIRAS1Q9NYS0 192 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 PI4KBQ9UBF8 816 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 SASH3O75995 380 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 BRDTQ58F21 947 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-213ENST00000514442 NLRP14Q86W24 1093 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 MCF2L2Q86YR7 1114 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 HPCAL4Q9UM19 191 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 USTQ9Y2C2 406 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 CD19P15391 556 aa14.33□□□□□ -0.11
TCOF1-213ENST00000514442 TRPC6Q9Y210 931 aa14.33□□□□□ -0.11
TCOF1-213ENST00000514442 TRAPPC10P48553 1259 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 SH2D4BQ5SQS7 431 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 CEP128Q6ZU80 1094 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 GSPT2Q8IYD1 628 aaKnown RBP14.33□□□□□ -0.12
TCOF1-213ENST00000514442 EPSTI1Q96J88 318 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 AGLP35573 1532 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 MYO1FO00160 1098 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 MEIS1O00470 390 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 CEP104O60308 925 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 DNM2P50570 870 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 NFIXQ14938 502 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 PPP1R14CQ8TAE6 165 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 LARP4BQ92615 738 aaKnown RBP14.33□□□□□ -0.12
TCOF1-213ENST00000514442 IRAK1P51617 712 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 REXO1L1PQ8IX06 675 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 TTLL6Q8N841 843 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 SUGCTQ9HAC7 445 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.33□□□□□ -0.12
TCOF1-213ENST00000514442 RABGAP1Q9Y3P9 1069 aa14.33□□□□□ -0.12
TCOF1-213ENST00000514442 DDX12PQ92771 950 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 CCDC97Q96F63 343 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 DHX36Q9H2U1 1008 aaKnown RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 ARMCX3Q9UH62 379 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 PREX1Q8TCU6 1659 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 NDUFA10O95299 355 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 FOSP01100 380 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 GPSM2P81274 684 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 CALCOCO2Q13137 446 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 ADAM9Q13443 819 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 DNAJC5Q9H3Z4 198 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 CD248Q9HCU0 757 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 AGTPBP1Q9UPW5 1226 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 BCRP11274 1271 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 HOXA13P31271 388 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 CDAN1Q8IWY9 1227 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 U2AF1L4Q8WU68 220 aaKnown RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 KCND1Q9NSA2 647 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 HGSO14964 777 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 ATP2A1O14983 1001 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 ABCB4P21439 1286 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 RABL6Q3YEC7 729 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 APBB1IPQ7Z5R6 666 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-213ENST00000514442 EPB41L5Q9HCM4 733 aa14.32□□□□□ -0.12
TCOF1-213ENST00000514442 ACTN4O43707 911 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 HEXIM1O94992 359 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 CRKP46108 304 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 SYDE2Q5VT97 1194 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 ZNF577Q9BSK1 485 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 IQCGQ9H095 443 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 DCP1AQ9NPI6 582 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 RGS16O15492 202 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 GNA14O95837 355 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 STAT2P52630 851 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 POLR2FP61218 127 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 CDC37Q16543 378 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 LIN9Q5TKA1 542 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 MB21D2Q8IYB1 491 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 DPF2Q92785 391 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 MAK16Q9BXY0 300 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 IQGAP1P46940 1657 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 AOC3Q16853 763 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 DALRD3Q5D0E6 543 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 DENND2CQ68D51 928 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 MARCH10Q8NA82 808 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 CCDC127Q96BQ5 260 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 FAM84BQ96KN1 310 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms