RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TCP1P17987 556 aaKnown RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 TMOD1P28289 359 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 EPS15P42566 896 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 EHHADHQ08426 723 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 GALNT17Q6IS24 598 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 EMBQ6PCB8 327 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 CNPY4Q8N129 248 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 MSL3Q8N5Y2 521 aaKnown RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 PLAAQ9Y263 795 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 MARCH6O60337 910 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 CLTAP09496 248 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 FAM153BP0C7A2 387 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 CTNNA1P35221 906 aaKnown RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 KIF11P52732 1056 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 NFIXQ14938 502 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 INF2Q27J81 1249 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 FAM153CQ494X1 144 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 ALS2CLQ60I27 953 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 FNBP4Q8N3X1 1017 aaPredicted RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 SLC44A5Q8NCS7 719 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 AENQ8WTP8 325 aaKnown RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 TCP11Q8WWU5 503 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 HPS3Q969F9 1004 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 ZKSCAN4Q969J2 545 aaPredicted RBP10.63□□□□□ -0.71
VCAN-210ENST00000513960 ZHX3Q9H4I2 956 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 FAM153AQ9UHL3 310 aa10.63□□□□□ -0.71
VCAN-210ENST00000513960 PDXDC2PQ6P474 469 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 GPR101Q96P66 508 aaPredicted RBP10.62□□□□□ -0.71
VCAN-210ENST00000513960 NOX5Q96PH1 765 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 LZTS2Q9BRK4 669 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 GRIN2DO15399 1336 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 MYH13Q9UKX3 1938 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 UFL1O94874 794 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 PAX7P23759 505 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 NAPAP54920 295 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 PRPF4BQ13523 1007 aaKnown RBP10.62□□□□□ -0.71
VCAN-210ENST00000513960 SOGA3Q5TF21 947 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 TEX11Q8IYF3 940 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 ARFGAP2Q8N6H7 521 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 ANKS1AQ92625 1134 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 EPN3Q9H201 632 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 CAPN11Q9UMQ6 739 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 COL5A3P25940 1745 aaPredicted RBP10.62□□□□□ -0.71
VCAN-210ENST00000513960 SCN7AQ01118 1682 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 FAM205AQ6ZU69 1335 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 KLRF2D3W0D1 207 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 GOLGA8HP0CJ92 632 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 GCKP35557 465 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 PPP4CP60510 307 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 ZBED6P86452 979 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 IL17AQ16552 155 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 HIBCHQ6NVY1 386 aaPredicted RBP10.62□□□□□ -0.71
VCAN-210ENST00000513960 CACNA2D3Q8IZS8 1091 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 CDK5RAP3Q96JB5 506 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 TMEM47Q9BQJ4 181 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 SLC39A2Q9NP94 309 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 TCP11L1Q9NUJ3 509 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 SEC63Q9UGP8 760 aaKnown RBP10.62□□□□□ -0.71
VCAN-210ENST00000513960 MAD2L2Q9UI95 211 aa10.62□□□□□ -0.71
VCAN-210ENST00000513960 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.62□□□□□ -0.71
VCAN-210ENST00000513960 BTDP43251 543 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 GFPT1Q06210 699 aaPredicted RBP10.61□□□□□ -0.71
VCAN-210ENST00000513960 KRT71Q3SY84 523 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 WDR59Q6PJI9 974 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 FAM196AQ6ZSG2 479 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 FAM114A1Q8IWE2 563 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 PRPF38AQ8NAV1 312 aaKnown RBP10.61□□□□□ -0.71
VCAN-210ENST00000513960 EYA3Q99504 573 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 DISC1Q9NRI5 854 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 ANO9A1A5B4 782 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 ADAMTS3O15072 1205 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 CEP104O60308 925 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 PLCG2P16885 1265 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 PTGISQ16647 500 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 DYMQ7RTS9 669 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 UHMK1Q8TAS1 419 aaKnown RBP10.61□□□□□ -0.71
VCAN-210ENST00000513960 MYCBPAPQ8TBZ2 947 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 NUP58Q9BVL2 599 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 VAT1LQ9HCJ6 419 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 BARHL2Q9NY43 387 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 SHOX2O60902 331 aaPredicted RBP10.61□□□□□ -0.71
VCAN-210ENST00000513960 HAUS3Q68CZ6 603 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 SLF2Q8IX21 1173 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 PARP9Q8IXQ6 854 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 UIMC1Q96RL1 719 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 USP21Q9UK80 565 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 PCDHA6Q9UN73 950 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 NOVA2Q9UNW9 492 aaKnown RBP10.61□□□□□ -0.71
VCAN-210ENST00000513960 PCDHA8Q9Y5H6 950 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 A0A1B0GUL6 1792 aa10.61□□□□□ -0.71
VCAN-210ENST00000513960 GLI1P08151 1106 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 EEF1GP26641 437 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 MDH1P40925 334 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 RAPGEF1Q13905 1077 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 SPATS2Q86XZ4 545 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 RSRC1Q96IZ7 334 aaKnown RBP10.6□□□□□ -0.71
VCAN-210ENST00000513960 DPH5Q9H2P9 285 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 C6orf50Q9HD87 102 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 GGA1Q9UJY5 639 aa10.6□□□□□ -0.71
VCAN-210ENST00000513960 A6NNZ2 444 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms