RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ST18O60284 1047 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 RSPH10BP0C881 870 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 PTPN5P54829 565 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 HNRNPUQ00839 825 aaKnown RBP eCLIP12.85□□□□□ -0.35
DDX41-216ENST00000513562 STXBP2Q15833 593 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 USH1GQ495M9 461 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 BMP8AQ7Z5Y6 402 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 SERINC5Q86VE9 423 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 SYTL5Q8TDW5 730 aaPredicted RBP12.85□□□□□ -0.35
DDX41-216ENST00000513562 TAAR1Q96RJ0 339 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 IWS1Q96ST2 819 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 FSD1Q9BTV5 496 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 COL20A1Q9P218 1284 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 MBTPS2O43462 519 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 THPOP40225 353 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 LAMC2Q13753 1193 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 RNF135Q8IUD6 432 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 DHX37Q8IY37 1157 aaKnown RBP12.84□□□□□ -0.35
DDX41-216ENST00000513562 PI4K2BQ8TCG2 481 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 SEPT8Q92599 483 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 EDAQ92838 391 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 RMDN3Q96TC7 470 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 MRVI1Q9Y6F6 885 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 TTC41PQ6P2S7 1318 aa12.84□□□□□ -0.35
DDX41-216ENST00000513562 C5orf42Q9H799 3197 aa12.83□□□□□ -0.35
DDX41-216ENST00000513562 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.83□□□□□ -0.36
DDX41-216ENST00000513562 C5orf67F2Z3F1 127 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 EIF3JO75822 258 aaKnown RBP12.83□□□□□ -0.36
DDX41-216ENST00000513562 HOXC8P31273 242 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 DLX2Q07687 328 aaPredicted RBP12.83□□□□□ -0.36
DDX41-216ENST00000513562 HYAL1Q12794 435 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 SMAD4Q13485 552 aaKnown RBP12.83□□□□□ -0.36
DDX41-216ENST00000513562 CLUL1Q15846 466 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 IER5LQ5T953 404 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 VPS53Q5VIR6 699 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 TBC1D5Q92609 795 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 PRRX2Q99811 253 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 LMAN2LQ9H0V9 348 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 DCTPP1Q9H773 170 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 TOMM22Q9NS69 142 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 ZNF318Q5VUA4 2279 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 ABCB11O95342 1321 aa12.83□□□□□ -0.36
DDX41-216ENST00000513562 CFAP54Q96N23 3096 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 CAND2O75155 1236 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 TBX10O75333 385 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 PPFIA4O75335 1185 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 UPP2O95045 317 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 LINC00271P0C7V0 271 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 ALX1Q15699 326 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 PKN1Q16512 942 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 CDC37Q16543 378 aaPredicted RBP12.82□□□□□ -0.36
DDX41-216ENST00000513562 RRP12Q5JTH9 1297 aaKnown RBP12.82□□□□□ -0.36
DDX41-216ENST00000513562 GPATCH4Q5T3I0 446 aaKnown RBP12.82□□□□□ -0.36
DDX41-216ENST00000513562 MCF2L2Q86YR7 1114 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 TTC14Q96N46 770 aa12.82□□□□□ -0.36
DDX41-216ENST00000513562 C11orf84Q9BUA3 381 aaPredicted RBP12.82□□□□□ -0.36
DDX41-216ENST00000513562 IFIH1Q9BYX4 1025 aaKnown RBP12.82□□□□□ -0.36
DDX41-216ENST00000513562 TMEM221A6NGB7 291 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 M0R296 226 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 STXBP3O00186 592 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 RB1P06400 928 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 GOLGA8HP0CJ92 632 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 EIF2AK2P19525 551 aaKnown RBP12.81□□□□□ -0.36
DDX41-216ENST00000513562 CTNNB1P35222 781 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 TCF15Q12870 199 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 HSDL1Q3SXM5 330 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 ARHGEF16Q5VV41 709 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 MYSM1Q5VVJ2 828 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 TRIM67Q6ZTA4 783 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 ATP6V0A1Q93050 837 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 C16orf70Q9BSU1 422 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 OSBPL7Q9BZF2 842 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 CPVLQ9H3G5 476 aa12.81□□□□□ -0.36
DDX41-216ENST00000513562 C17orf102A2RUQ5 167 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 GRM6O15303 877 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 RGS20O76081 388 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 NR3C2P08235 984 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 BMPR1AP36894 532 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 CELF3Q5SZQ8 465 aaKnown RBP12.8□□□□□ -0.36
DDX41-216ENST00000513562 FIBCD1Q8N539 461 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 APBB2Q92870 758 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 PBXIP1Q96AQ6 731 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 IL17RAQ96F46 866 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 SPATA33Q96N06 139 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 UBA5Q9GZZ9 404 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 RC3H2Q9HBD1 1191 aaKnown RBP12.8□□□□□ -0.36
DDX41-216ENST00000513562 PXMP2Q9NR77 195 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 CD207Q9UJ71 328 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 RWDD3Q9Y3V2 267 aa12.8□□□□□ -0.36
DDX41-216ENST00000513562 TREHO43280 583 aa12.79□□□□□ -0.36
DDX41-216ENST00000513562 EYA4O95677 639 aa12.79□□□□□ -0.36
DDX41-216ENST00000513562 FGAP02671 866 aa12.79□□□□□ -0.36
DDX41-216ENST00000513562 CTSHP09668 335 aa12.79□□□□□ -0.36
DDX41-216ENST00000513562 GTF2F1P35269 517 aaKnown RBP eCLIP12.79□□□□□ -0.36
DDX41-216ENST00000513562 KCNV1Q6PIU1 500 aa12.79□□□□□ -0.36
DDX41-216ENST00000513562 SUGP1Q8IWZ8 645 aaKnown RBP12.79□□□□□ -0.36
DDX41-216ENST00000513562 OTUD7AQ8TE49 926 aaPredicted RBP12.79□□□□□ -0.36
DDX41-216ENST00000513562 CLP1Q92989 425 aaKnown RBP12.79□□□□□ -0.36
DDX41-216ENST00000513562 MSLNLQ96KJ4 702 aa12.79□□□□□ -0.36
DDX41-216ENST00000513562 ALG13Q9NP73 1137 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms