RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 ZNF304Q9HCX3 659 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 KMT5AQ9NQR1 393 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 ALDH1L2Q3SY69 923 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 SPOPLQ6IQ16 392 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 SAMSN1Q9NSI8 373 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 NXF1Q9UBU9 619 aaKnown RBP9.65□□□□□ -0.86
VCAN-208ENST00000512590 ATP11BQ9Y2G3 1177 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 JRKLQ9Y4A0 524 aa9.65□□□□□ -0.86
VCAN-208ENST00000512590 TTI1O43156 1089 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 DEXIO95424 95 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 APOEP02649 317 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 SERPINB2P05120 415 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 HSPA1AP0DMV8 641 aaKnown RBP9.65□□□□□ -0.87
VCAN-208ENST00000512590 HSPA1BP0DMV9 641 aaKnown RBP9.65□□□□□ -0.87
VCAN-208ENST00000512590 IRF1P10914 325 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 YWHAGP61981 247 aaKnown RBP eCLIP9.65□□□□□ -0.87
VCAN-208ENST00000512590 CABP7Q86V35 215 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 CSGALNACT1Q8TDX6 532 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 ZFP91Q96JP5 570 aaPredicted RBP9.65□□□□□ -0.87
VCAN-208ENST00000512590 TBC1D32Q96NH3 1257 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 PNMA5Q96PV4 448 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 ZNF341Q9BYN7 854 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 SP110Q9HB58 689 aa9.65□□□□□ -0.87
VCAN-208ENST00000512590 ARPP21Q9UBL0 812 aaPredicted RBP9.65□□□□□ -0.87
VCAN-208ENST00000512590 DBR1Q9UK59 544 aaKnown RBP9.65□□□□□ -0.87
VCAN-208ENST00000512590 FAM47DPA6NHR8 397 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 HUS1O60921 280 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 PTPAQ15257 358 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.64□□□□□ -0.87
VCAN-208ENST00000512590 PCDHGA4Q9Y5G9 962 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 P4HA2O15460 535 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 C21orf2O43822 256 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 PCK1P35558 622 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 GPR1P46091 355 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CYP4A11Q02928 519 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 ARHGEF7Q14155 803 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 ERAP2Q6P179 960 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 LUZP2Q86TE4 346 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 FAM178BQ8IXR5 827 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 YEATS2Q9ULM3 1422 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 RNF123Q5XPI4 1314 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 MROH5Q6ZUA9 1318 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 MEIS1O00470 390 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 SESN3P58005 492 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 TRIM32Q13049 653 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 TMC4Q7Z404 712 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CLYBLQ8N0X4 340 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 RHPN1Q8TCX5 695 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 DNAJC1Q96KC8 554 aaKnown RBP9.64□□□□□ -0.87
VCAN-208ENST00000512590 SPACA7Q96KW9 195 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 ZNF577Q9BSK1 485 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 PPP1R12CQ9BZL4 782 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 RASGRF2O14827 1237 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CELF2O95319 508 aaKnown RBP9.64□□□□□ -0.87
VCAN-208ENST00000512590 KRT20P35900 424 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 ADCY8P40145 1251 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 NSFP46459 744 aaKnown RBP9.64□□□□□ -0.87
VCAN-208ENST00000512590 HUNKP57058 714 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 EVCP57679 992 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CAPN12Q6ZSI9 719 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 SKAP1Q86WV1 359 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 GBP5Q96PP8 586 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 GGT7Q9UJ14 662 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 SNX6Q9UNH7 406 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 BRD4O60885 1362 aaPredicted RBP9.64□□□□□ -0.87
VCAN-208ENST00000512590 CPP00450 1065 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 PDIA3P30101 505 aaKnown RBP9.64□□□□□ -0.87
VCAN-208ENST00000512590 ABCD1P33897 745 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 MCM4P33991 863 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 PPP2R3AQ06190 1150 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 TTC31Q49AM3 519 aaPredicted RBP9.64□□□□□ -0.87
VCAN-208ENST00000512590 BEND3Q5T5X7 828 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CROCCP2Q86T23 111 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CSGALNACT2Q8N6G5 542 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 B4GALNT2Q8NHY0 566 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 CEP170P1Q96L14 293 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 TRAF3IP3Q9Y228 551 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 SPACA6W5XKT8 324 aa9.64□□□□□ -0.87
VCAN-208ENST00000512590 B4E1Z4 1266 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 ZRANB2O95218 330 aaKnown RBP eCLIP9.63□□□□□ -0.87
VCAN-208ENST00000512590 TTLL4Q14679 1199 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 TSC22D1Q15714 1073 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 RNF207Q6ZRF8 634 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 SPATA2LQ8IUW3 424 aaPredicted RBP9.63□□□□□ -0.87
VCAN-208ENST00000512590 SEPT12Q8IYM1 358 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 GMCL1Q96IK5 515 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 PAWRQ96IZ0 340 aaKnown RBP9.63□□□□□ -0.87
VCAN-208ENST00000512590 YME1L1Q96TA2 773 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 SPATS2LQ9NUQ6 558 aaKnown RBP9.63□□□□□ -0.87
VCAN-208ENST00000512590 RUVBL2Q9Y230 463 aaKnown RBP9.63□□□□□ -0.87
VCAN-208ENST00000512590 CEP104O60308 925 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 RARBP10826 455 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 FCER1AP12319 257 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 SURF1Q15526 300 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 PDXDC2PQ6P474 469 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 KRT78Q8N1N4 520 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 PPM1KQ8N3J5 372 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 NECAB1Q8N987 351 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 HES6Q96HZ4 224 aa9.63□□□□□ -0.87
VCAN-208ENST00000512590 PARK7Q99497 189 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms