RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 CYP2E1P05181 493 aaPredicted RBP10.83□□□□□ -0.68
USP53-207ENST00000510852 TYRP1P17643 537 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 CTNNA1P35221 906 aaKnown RBP10.83□□□□□ -0.68
USP53-207ENST00000510852 RAD52P43351 418 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 PURAQ00577 322 aaKnown RBP10.83□□□□□ -0.68
USP53-207ENST00000510852 TCEAL8Q8IYN2 117 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 DRAXINQ8NBI3 349 aaPredicted RBP10.83□□□□□ -0.68
USP53-207ENST00000510852 GBP4Q96PP9 640 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 SYT17Q9BSW7 474 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 FSD1Q9BTV5 496 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 MRPL9Q9BYD2 267 aaKnown RBP10.83□□□□□ -0.68
USP53-207ENST00000510852 UNC45AQ9H3U1 944 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 CD209Q9NNX6 404 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 TBC1D7Q9P0N9 293 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 DENND2AQ9ULE3 1009 aa10.83□□□□□ -0.68
USP53-207ENST00000510852 J3KRW8 73 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 TREHO43280 583 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 STK3Q13188 491 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 GPATCH4Q5T3I0 446 aaKnown RBP10.82□□□□□ -0.68
USP53-207ENST00000510852 NEK10Q6ZWH5 1172 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 KBTBD3Q8NAB2 608 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 SUPT20HQ8NEM7 779 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 TRIM55Q9BYV6 548 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 COL1A1P02452 1464 aaPredicted RBP10.82□□□□□ -0.68
USP53-207ENST00000510852 ALG1L2C9J202 215 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 TIPRLO75663 272 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 FMNL1O95466 1100 aaPredicted RBP10.82□□□□□ -0.68
USP53-207ENST00000510852 IL1R1P14778 569 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 CHMLP26374 656 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 KRT20P35900 424 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 MRPS35P82673 323 aaKnown RBP10.82□□□□□ -0.68
USP53-207ENST00000510852 CARNMT1Q8N4J0 409 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 MAGEB6Q8N7X4 407 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 BRSK1Q8TDC3 778 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 GTF3C2Q8WUA4 911 aaPredicted RBP10.82□□□□□ -0.68
USP53-207ENST00000510852 ALPK1Q96QP1 1244 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 COA1Q9GZY4 146 aa10.82□□□□□ -0.68
USP53-207ENST00000510852 PIH1D3Q9NQM4 214 aaKnown RBP10.82□□□□□ -0.68
USP53-207ENST00000510852 KLF4O43474 513 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 KRT83P78385 493 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 RAB33AQ14088 237 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 DOK7Q18PE1 504 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 TUBB8Q3ZCM7 444 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 PPP1R15BQ5SWA1 713 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 FAM102BQ5T8I3 360 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 NUGGCQ68CJ6 796 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 PACS1Q6VY07 963 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 ZNHIT6Q9NWK9 470 aaKnown RBP10.81□□□□□ -0.68
USP53-207ENST00000510852 SEPT3Q9UH03 358 aa10.81□□□□□ -0.68
USP53-207ENST00000510852 BRCA1P38398 1863 aaKnown RBP10.81□□□□□ -0.68
USP53-207ENST00000510852 PDS5AQ29RF7 1337 aaKnown RBP10.81□□□□□ -0.68
USP53-207ENST00000510852 KRT72Q14CN4 511 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 PLCB4Q15147 1175 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 AOC3Q16853 763 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 KIF4BQ2VIQ3 1234 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 YIPF2Q9BWQ6 316 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 JAG2Q9Y219 1238 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 AKAP11Q9UKA4 1901 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 G3V3G9 751 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 CTSHP09668 335 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 GRK2P25098 689 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 PIN1Q13526 163 aaPredicted RBP10.8□□□□□ -0.68
USP53-207ENST00000510852 C1orf228Q6PIY5 440 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 HNRNPLLQ8WVV9 542 aaKnown RBP10.8□□□□□ -0.68
USP53-207ENST00000510852 SARGQ9BW04 601 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 TRIM8Q9BZR9 551 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 ZNF277Q9NRM2 450 aaPredicted RBP10.8□□□□□ -0.68
USP53-207ENST00000510852 GIMAP2Q9UG22 337 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 UTRNP46939 3433 aa10.8□□□□□ -0.68
USP53-207ENST00000510852 HIP1O00291 1037 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 PPIP5K2O43314 1243 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 SEC24BO95487 1268 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 CHGBP05060 677 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 GZMAP12544 262 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 SEPHS1P49903 392 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 GUCY2FP51841 1108 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 RRP12Q5JTH9 1297 aaKnown RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 THNSL2Q86YJ6 484 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 C7orf61Q8IZ16 206 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 TAB3Q8N5C8 712 aaPredicted RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 BICD2Q8TD16 824 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 TRPM4Q8TD43 1214 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 PARD3BQ8TEW8 1205 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 ELAC2Q9BQ52 826 aaKnown RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 ANKEF1Q9NU02 776 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 OBP2AQ9NY56 170 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 ZNF112Q9UJU3 913 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 RFX7Q2KHR2 1363 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 NFKBIEO00221 500 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 KINO60870 393 aaKnown RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 SKAP2O75563 359 aaPredicted RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 IDH1O75874 414 aaKnown RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 FGFR1OPO95684 399 aaKnown RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 PLIN5Q00G26 463 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 APOBRQ0VD83 1088 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 ACAP1Q15027 740 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 FKBP15Q5T1M5 1219 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 CWC27Q6UX04 472 aaKnown RBP10.79□□□□□ -0.68
USP53-207ENST00000510852 LSMEM1Q8N8F7 131 aa10.79□□□□□ -0.68
USP53-207ENST00000510852 PXYLP1Q8TE99 480 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms