RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 RNF208Q9H0X6 261 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 TXNP10599 105 aaKnown RBP33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 GCFC2P16383 781 aaKnown RBP33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 SMPD1P17405 629 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 ATP2B1P20020 1258 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 ICAM3P32942 547 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 TNFAIP2Q03169 654 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 IQSEC1Q6DN90 963 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 CCDC62Q6P9F0 684 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 PLA2G4DQ86XP0 818 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 CDHR1Q96JP9 859 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 PAK6Q9NQU5 681 aaPredicted RBP33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 KCNH7Q9NS40 1196 aa33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 DDX20Q9UHI6 824 aaKnown RBP33.64■■■□□ 2.98
LIMCH1-211ENST00000509638 CYP3A7-CYP3A51PA0A087WV96 503 aa33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 SPATA31C2B4DYI2 1134 aa33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 PTGS1P23219 599 aa33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 CYP3A7P24462 503 aa33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 GJC2Q5T442 439 aaPredicted RBP33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 FOXD4L5Q5VV16 416 aaPredicted RBP33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 FOXD4L4Q8WXT5 416 aaPredicted RBP33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 NAP1L4Q99733 375 aaKnown RBP33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 DDX25Q9UHL0 483 aaKnown RBP33.63■■■□□ 2.97
LIMCH1-211ENST00000509638 SLC37A4O43826 429 aa33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 ZSCAN22P10073 491 aaPredicted RBP33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 UBA1P22314 1058 aaKnown RBP33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 TRAPPC10P48553 1259 aa33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 LY6KQ17RY6 165 aa33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 DUSP28Q4G0W2 176 aa33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 PPP4R3AQ6IN85 833 aa33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 KCNV1Q6PIU1 500 aa33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 MBOAT7Q96N66 472 aa33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 DDX41Q9UJV9 622 aaKnown RBP33.62■■■□□ 2.97
LIMCH1-211ENST00000509638 ARP10275 920 aa33.61■■■□□ 2.97
LIMCH1-211ENST00000509638 NBR1Q14596 966 aa33.61■■■□□ 2.97
LIMCH1-211ENST00000509638 PKD2L1Q9P0L9 805 aa33.61■■■□□ 2.97
LIMCH1-211ENST00000509638 KIAA0100Q14667 2235 aaKnown RBP33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 MSCO60682 206 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 TGFB3P10600 412 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 RARBP10826 455 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 DDIT3P35638 169 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 TOB1P50616 345 aaPredicted RBP33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 Q4G0T1 1027 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 TTC38Q5R3I4 469 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 SP2Q02086 613 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 RILPL1Q5EBL4 403 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 MYSM1Q5VVJ2 828 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 COPS5Q92905 334 aa33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 ZSCAN16Q9H4T2 348 aaPredicted RBP33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 GNEQ9Y223 722 aaKnown RBP33.6■■■□□ 2.97
LIMCH1-211ENST00000509638 MAFGO15525 162 aa33.59■■■□□ 2.97
LIMCH1-211ENST00000509638 TLK2Q86UE8 772 aa33.59■■■□□ 2.97
LIMCH1-211ENST00000509638 DEFB118Q96PH6 123 aa33.59■■■□□ 2.97
LIMCH1-211ENST00000509638 UIMC1Q96RL1 719 aa33.59■■■□□ 2.97
LIMCH1-211ENST00000509638 AGO4Q9HCK5 861 aaKnown RBP33.59■■■□□ 2.97
LIMCH1-211ENST00000509638 DUSP11O75319 330 aaKnown RBP33.58■■■□□ 2.97
LIMCH1-211ENST00000509638 F13A1P00488 732 aa33.58■■■□□ 2.97
LIMCH1-211ENST00000509638 KCNA2P16389 499 aa33.58■■■□□ 2.97
LIMCH1-211ENST00000509638 MCM7P33993 719 aa33.58■■■□□ 2.97
LIMCH1-211ENST00000509638 POTEDQ86YR6 584 aa33.58■■■□□ 2.97
LIMCH1-211ENST00000509638 IPO9Q96P70 1041 aaKnown RBP33.58■■■□□ 2.97
LIMCH1-211ENST00000509638 NKRFO15226 690 aaKnown RBP eCLIP33.57■■■□□ 2.96
LIMCH1-211ENST00000509638 ATP9AO75110 1047 aa33.57■■■□□ 2.96
LIMCH1-211ENST00000509638 BRD1O95696 1058 aa33.57■■■□□ 2.96
LIMCH1-211ENST00000509638 ZNF577Q9BSK1 485 aa33.57■■■□□ 2.96
LIMCH1-211ENST00000509638 SYNRGQ9UMZ2 1314 aa33.57■■■□□ 2.96
LIMCH1-211ENST00000509638 MSH4O15457 936 aa33.56■■■□□ 2.96
LIMCH1-211ENST00000509638 SORBS3O60504 671 aa33.56■■■□□ 2.96
LIMCH1-211ENST00000509638 NEMFO60524 1076 aa33.56■■■□□ 2.96
LIMCH1-211ENST00000509638 GGPS1O95749 300 aa33.56■■■□□ 2.96
LIMCH1-211ENST00000509638 LHX8Q68G74 356 aa33.56■■■□□ 2.96
LIMCH1-211ENST00000509638 SENP7Q9BQF6 1050 aa33.56■■■□□ 2.96
LIMCH1-211ENST00000509638 XPNPEP3Q9NQH7 507 aa33.56■■■□□ 2.96
LIMCH1-211ENST00000509638 IPO5O00410 1097 aaKnown RBP33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 ITGB3BPQ13352 177 aaPredicted RBP33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 FAM173BQ6P4H8 233 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 ZDHHC9Q9Y397 364 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 PCDHB6Q9Y5E3 794 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 GH1P01241 217 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 ARHGAP1Q07960 439 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 NEDD9Q14511 834 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 ZNF174Q15697 407 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 OR6J1Q8NGC5 347 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 ETNPPLQ8TBG4 499 aa33.55■■■□□ 2.96
LIMCH1-211ENST00000509638 ORC2Q13416 577 aaPredicted RBP33.54■■■□□ 2.96
LIMCH1-211ENST00000509638 CELF3Q5SZQ8 465 aaKnown RBP33.54■■■□□ 2.96
LIMCH1-211ENST00000509638 BCAS3Q9H6U6 928 aa33.54■■■□□ 2.96
LIMCH1-211ENST00000509638 KCNMB3Q9NPA1 279 aa33.54■■■□□ 2.96
LIMCH1-211ENST00000509638 PGK1P00558 417 aa33.53■■■□□ 2.96
LIMCH1-211ENST00000509638 GJB1P08034 283 aa33.53■■■□□ 2.96
LIMCH1-211ENST00000509638 CYFIP1Q7L576 1253 aa33.53■■■□□ 2.96
LIMCH1-211ENST00000509638 DHX37Q8IY37 1157 aaKnown RBP33.53■■■□□ 2.96
LIMCH1-211ENST00000509638 GIMAP8Q8ND71 665 aaPredicted RBP33.53■■■□□ 2.96
LIMCH1-211ENST00000509638 GJA10Q969M2 543 aa33.53■■■□□ 2.96
LIMCH1-211ENST00000509638 DYNC1LI2O43237 492 aaPredicted RBP33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 FARP2O94887 1054 aaPredicted RBP33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 CALCRLQ16602 461 aa33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 TNS4Q8IZW8 715 aa33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 U2AF1L4Q8WU68 220 aaKnown RBP33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 SDF4Q9BRK5 362 aa33.52■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms